(Q45973674)

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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

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scholarly article

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. (English)

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

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object named as

Jed A Fuhrman

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

author name string

Alma E Parada

1

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

David M Needham

2

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

publication date

14 August 2015

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

Environmental Microbiology

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

18

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

5

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

1403-1414

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

1 reference

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Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

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QIIME allows analysis of high-throughput community sequencing data

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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Search and clustering orders of magnitude faster than BLAST

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UCHIME improves sensitivity and speed of chimera detection

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The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

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Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre

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DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

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Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

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Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

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Swarm: robust and fast clustering method for amplicon-based studies

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SAR11 clade dominates ocean surface bacterioplankton communities.

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Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea.

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The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies

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Identifiers

10.1111/1462-2920.13023

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/26271760

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