(Q42257061)

19 October 2017

What should the Z-score of native protein structures be? (English)

1 reference

19 October 2017

L Zhang

1

1 reference

PMC publication ID

2144000

19 October 2017

J Skolnick

series ordinal

2

1 reference

19 October 2017

1 May 1998

1 reference

19 October 2017

1 reference

19 October 2017

7

1 reference

19 October 2017

5

1 reference

19 October 2017

1201-1207

1 reference

How do potentials derived from structural databases relate to "true" potentials?

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Protein structure prediction force fields: parametrization with quasi-newtonian dynamics

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

The concept of a random coil. Residual structure in peptides and denatured proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

On the origin of the cooperativity of protein folding: implications from model simulations

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Potential energy functions for threading

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Energetics of protein structure.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Funnels, pathways, and the energy landscape of protein folding: a synthesis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Atomic environment energies in proteins defined from statistics of accessible and contact surface areas

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Knowledge-based potentials for proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Stability of proteins: small globular proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Contact potential that recognizes the correct folding of globular proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Statistical potentials extracted from protein structures: how accurate are they?

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Peptide conformation and protein folding

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPRO.5560070515

Novel knowledge-based mean force potential at atomic level

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144000

Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach

1 December 2018

1 reference

12 December 2020

Recognizing native folds by the arrangement of hydrophobic and polar residues

1 reference

12 December 2020

The heat capacity of proteins

1 reference

12 December 2020

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

12 December 2020

Protein fold recognition and dynamics in the space of contact maps

1 reference

12 December 2020

Monte Carlo simulations of protein folding using inexact potentials: how accurate must parameters be in order to preserve the essential features of the energy landscape?

1 reference

12 December 2020

Identifiers

DOI

10.1002/PRO.5560070515

1 reference

19 October 2017

1 reference

PMC publication ID

2144000

19 October 2017

PubMed publication ID

9605325

1 reference

PMC publication ID

2144000