(Q42598151)

3 November 2017

Paf1 restricts Gcn4 occupancy and antisense transcription at the ARG1 promoter (English)

1 reference

3 November 2017

Elia M Crisucci

1

1 reference

3 November 2017

Karen M Arndt

series ordinal

2

1 reference

3 November 2017

language of work or name

English

0 references

publication date

17 January 2012

1 reference

Molecular and Cellular Biology

3 November 2017

1 reference

3 November 2017

32

1 reference

3 November 2017

6

1 reference

3 November 2017

1150-1163

1 reference

describes a project that uses

3 November 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3295010/fullTextXML

inferred from PubMed Central ID database lookup

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The Paf1 complex represses ARG1 transcription in Saccharomyces cerevisiae by promoting histone modifications

28 May 2018

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A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors.

28 May 2018

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Transcriptional activators enhance polyadenylation of mRNA precursors

28 May 2018

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28 May 2018

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28 May 2018

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Gene regulation by nucleosome positioning

28 May 2018

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28 May 2018

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Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

28 May 2018

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The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS

28 May 2018

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DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation

28 May 2018

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A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

28 May 2018

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Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability.

28 May 2018

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Parafibromin--functional insights

28 May 2018

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RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells

28 May 2018

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A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity

28 May 2018

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Bidirectional promoters generate pervasive transcription in yeast

28 May 2018

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The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors

28 May 2018

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A chemical genomics study identifies Snf1 as a repressor of GCN4 translation

28 May 2018

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Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants

28 May 2018

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Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II.

28 May 2018

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Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes

28 May 2018

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Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

28 May 2018

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Human RNA polymerase II-associated factor complex: dysregulation in cancer.

28 May 2018

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A role for noncoding transcription in activation of the yeast PHO5 gene

28 May 2018

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H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state

28 May 2018

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A high-resolution map of transcription in the yeast genome

28 May 2018

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The human homologue of the RNA polymerase II-associated factor 1 (hPaf1), localized on the 19q13 amplicon, is associated with tumorigenesis.

28 May 2018

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Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation

28 May 2018

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Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

28 May 2018

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A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation

28 May 2018

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BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex

28 May 2018

1 reference

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Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo

28 May 2018

1 reference

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The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter

28 May 2018

1 reference

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Histone H2B ubiquitylation is associated with elongating RNA polymerase II

28 May 2018

1 reference

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

28 May 2018

1 reference

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The Paf1 complex has functions independent of actively transcribing RNA polymerase II.

28 May 2018

1 reference

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An array of coactivators is required for optimal recruitment of TATA binding protein and RNA polymerase II by promoter-bound Gcn4p

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

A multiplicity of coactivators is required by Gcn4p at individual promoters in vivo

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Gene silencing: trans-histone regulatory pathway in chromatin

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The E2 ubiquitin conjugase Rad6 is required for the ArgR/Mcm1 repression of ARG1 transcription

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

ArgRII, a component of the ArgR-Mcm1 complex involved in the control of arginine metabolism in Saccharomyces cerevisiae, is the sensor of arginine

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Recruitment of the yeast MADS-box proteins, ArgRI and Mcm1 by the pleiotropic factor ArgRIII is required for their stability

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Organization of theGAL1–GAL10intergeaic control region chromatin

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Mutations affecting the repressibility of arginine biosynthetic enzymes in Saccharomyces cerevisiae

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

A hierarchy of trans-acting factors modulates translation of an activator of amino acid biosynthetic genes in Saccharomyces cerevisiae

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The general control of amino acid biosynthetic genes in the yeast Saccharomyces cerevisiae

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Multiple upstream AUG codons mediate translational control of GCN4.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Characterization of two genes, ARGRI and ARGRIII required for specific regulation of arginine metabolism in yeast.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Arginine-specific repression in Saccharomyces cerevisiae: kinetic data on ARG1 and ARG3 mRNA transcription and stability support a transcriptional control mechanism

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Functional analysis of ARGRI and ARGRIII regulatory proteins involved in the regulation of arginine metabolism in Saccharomyces cerevisiae

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The Regulation of Arginine Biosynthesis in Saccharomyces cerevisiae. The Specificity of argR- Mutations and the General Control of Amino-Acid Biosynthesis

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

Further definition of the sequence and position requirements of the arginine control element that mediates repression and induction by arginine in Saccharomyces cerevisiae.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3295010

The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain

16 August 2018

1 reference

12 December 2020

Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription

1 reference

12 December 2020

Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines

1 reference

12 December 2020

A novel collection of accessory factors associated with yeast RNA polymerase II

1 reference

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

12 December 2020

Identifiers

DOI

10.1128/MCB.06262-11

1 reference

3 November 2017

1 reference

3 November 2017

1 reference