(Q42671637)

English

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes

scientific article published on 7 October 2012

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scholarly article

1 reference

Europe PubMed Central

4 November 2017

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes (English)

1 reference

Europe PubMed Central

4 November 2017

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Pierre B Cattenoz

3

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Europe PubMed Central

4 November 2017

7

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Europe PubMed Central

4 November 2017

Marcel E. Dinger

8

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Europe PubMed Central

4 November 2017

Seth W Cheetham

object named as

Seth W Cheetham

2

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Michael B. Clark

object named as

Michael B Clark

4

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object named as

Paulo P Amaral

5

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John S. Mattick

object named as

John S Mattick

9

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author name string

Dennis K Gascoigne

1

1 reference

Europe PubMed Central

4 November 2017

Ryan J Taft

6

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Europe PubMed Central

4 November 2017

language of work or name

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publication date

7 October 2012

1 reference

Europe PubMed Central

4 November 2017

1 reference

Europe PubMed Central

4 November 2017

28

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Europe PubMed Central

4 November 2017

23

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Europe PubMed Central

4 November 2017

3042-3050

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Europe PubMed Central

4 November 2017

Basic local alignment search tool

1 reference

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Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade

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Improved prediction of signal peptides: SignalP 3.0

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GenBank: update

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The product of the H19 gene may function as an RNA

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Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

1 reference

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

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mrtl-A translation/localization regulatory protein encoded within the human c-myc locus and distributed throughout the endoplasmic and nucleoplasmic reticular network

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Mammalian gene PEG10 expresses two reading frames by high efficiency -1 frameshifting in embryonic-associated tissues

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The reality of pervasive transcription

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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

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Differentiating protein-coding and noncoding RNA: challenges and ambiguities

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The evolution of RNAs with multiple functions

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Premature truncation of a novel protein, RD3, exhibiting subnuclear localization is associated with retinal degeneration

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Mechanisms of neuroprotection by a novel rescue factor humanin from Swedish mutant amyloid precursor protein

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

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Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

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The human genome browser at UCSC

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An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs

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Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression

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PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

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The relationship of protein conservation and sequence length

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Oscillating evolution of a mammalian locus with overlapping reading frames: an XLalphas/ALEX relay

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PRAC2: A new gene expressed in human prostate and prostate cancer

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A nucleolar protein, H19 opposite tumor suppressor (HOTS), is a tumor growth inhibitor encoded by a human imprinted H19 antisense transcript.

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BEDTools: a flexible suite of utilities for comparing genomic features

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H19 RNA binds four molecules of insulin-like growth factor II mRNA-binding protein

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Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians

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The evolutionary origin of orphan genes

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TopHat: discovering splice junctions with RNA-Seq

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Loss-of-function mutations of an inhibitory upstream ORF in the human hairless transcript cause Marie Unna hereditary hypotrichosis

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Identifiers

10.1093/BIOINFORMATICS/BTS582

1 reference

Europe PubMed Central

4 November 2017

DBLP publication ID

journals/bioinformatics/GascoigneCCCATWDM12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Europe PubMed Central

4 November 2017

ResearchGate publication ID

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