(Q42696435)

15 June 2018

title

Landscape of X chromosome inactivation across human tissues. (English)

1 reference

15 June 2018

Corrigendum: Landscape of X chromosome inactivation across human tissues

corrigendum / erratum

1 reference

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1038/NATURE25993

6

Rahul Satija

0 references

Nir Hacohen

36

Nir Hacohen

0 references

Taru Tukiainen

Taru Tukiainen

1

0 references

Aviv Regev

34

Aviv Regev

1 reference

PMCID

5685192

15 June 2018

Alexandra-Chloé Villani

2

Alexandra-Chloé Villani

1 reference

15 June 2018

Tuuli Lappalainen

Tuuli Lappalainen

33

0 references

Daniel G. MacArthur

Daniel G MacArthur

37

0 references

François Aguet

14

François Aguet

1 reference

15 June 2018

Angela Yen

3

Angela Yen

1 reference

15 June 2018

Matt Aguirre

7

Matt Aguirre

1 reference

15 June 2018

Laura D. Gauthier

8

Laura Gauthier

1 reference

15 June 2018

Mark Fleharty

9

Mark Fleharty

1 reference

15 June 2018

Andrew Kirby

10

Andrew Kirby

1 reference

15 June 2018

Beryl B Cummings

11

Beryl B Cummings

1 reference

15 June 2018

Stephane E Castel

12

Stephane E Castel

1 reference

15 June 2018

Konrad J. Karczewski

13

Konrad J Karczewski

1 reference

15 June 2018

GTEx Consortium

16

GTEx Consortium

1 reference

15 June 2018

author name string

Manuel A Rivas

4

1 reference

15 June 2018

Jamie L Marshall

5

1 reference

15 June 2018

Andrea Byrnes

15

1 reference

15 June 2018

Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group

17

1 reference

15 June 2018

Statistical Methods groups—Analysis Working Group

18

1 reference

15 June 2018

Enhancing GTEx (eGTEx) groups

19

1 reference

15 June 2018

NIH Common Fund

20

1 reference

15 June 2018

NIH/NCI

21

1 reference

15 June 2018

NIH/NHGRI

22

1 reference

15 June 2018

NIH/NIMH

23

1 reference

15 June 2018

NIH/NIDA

24

1 reference

15 June 2018

Biospecimen Collection Source Site—NDRI

25

1 reference

15 June 2018

Biospecimen Collection Source Site—RPCI

26

1 reference

15 June 2018

Biospecimen Core Resource—VARI

27

1 reference

15 June 2018

Brain Bank Repository—University of Miami Brain Endowment Bank

28

1 reference

15 June 2018

Leidos Biomedical—Project Management

29

1 reference

15 June 2018

ELSI Study

30

1 reference

15 June 2018

Genome Browser Data Integration &Visualization—EBI

31

1 reference

15 June 2018

Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz

32

1 reference

15 June 2018

Kristin G Ardlie

35

1 reference

15 June 2018

language of work or name

English

0 references

publication date

1 October 2017

1 reference

15 June 2018

published in

Nature

1 reference

15 June 2018

volume

550

1 reference

15 June 2018

issue

7675

1 reference

15 June 2018

page(s)

244-248

1 reference

15 June 2018

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5685192

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nature24265

0 references

cites work

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Random X-chromosome inactivation dynamics in vivo by single-cell RNA sequencing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Escape Artists of the X Chromosome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Tools and best practices for data processing in allelic expression analysis

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Human body epigenome maps reveal noncanonical DNA methylation variation

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Human genomics. The human transcriptome across tissues and individuals

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Assessing allele-specific expression across multiple tissues from RNA-seq read data

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Escape from X inactivation varies in mouse tissues

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Integrative analysis of 111 reference human epigenomes

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Computational and analytical challenges in single-cell transcriptomics

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

limma powers differential expression analyses for RNA-sequencing and microarray studies

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Biased allelic expression in human primary fibroblast single cells

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

X chromosome regulation: diverse patterns in development, tissues and disease

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Common genetic variants modulate pathogen-sensing responses in human dendritic cells

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Chromosome X-wide association study identifies Loci for fasting insulin and height and evidence for incomplete dosage compensation

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Global epigenomic reconfiguration during mammalian brain development

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

STAR: ultrafast universal RNA-seq aligner

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

RNA-SeQC: RNA-seq metrics for quality control and process optimization

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Transcriptional profiling of human liver identifies sex-biased genes associated with polygenic dyslipidemia and coronary artery disease

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

AlleleSeq: analysis of allele-specific expression and binding in a network framework

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

A map of human genome variation from population-scale sequencing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

A general framework for multiple testing dependence

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Large-scale population study of human cell lines indicates that dosage compensation is virtually complete

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Capturing heterogeneity in gene expression studies by surrogate variable analysis

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

X chromosome-inactivation patterns of 1,005 phenotypically unaffected females

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Principal components analysis corrects for stratification in genome-wide association studies

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

X-inactivation profile reveals extensive variability in X-linked gene expression in females

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

The DNA sequence of the human X chromosome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Elevated rates of protein secretion, evolution, and disease among tissue-specific genes

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

A 17q12 allele is associated with altered NK cell subsets and function.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Highly expressed genes in yeast evolve slowly.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5685192

Genetic effects on gene expression across human tissues

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE24265

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE24265

1 reference

15 June 2018

PMCID

5685192

1 reference

15 June 2018

PubMed ID

29022598

1 reference

15 June 2018