(Q44877165)

7 December 2017

Assessing species biomass contributions in microbial communities via metaproteomics (English)

1 reference

7 December 2017

0 references

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Erin Thorson

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Marc Strous

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Christine E Sharp

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Xiaoli Dong

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Dan Liu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Carmen Li

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

English

0 references

publication date

16 November 2017

1 reference

7 December 2017

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

1558

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

9 June 2020

copyright license

start time

16 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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25 May 2018

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25 May 2018

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25 May 2018

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Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

25 May 2018

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25 May 2018

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Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation.

25 May 2018

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Absolute quantification of microbial taxon abundances

25 May 2018

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Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

25 May 2018

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Tracking microbial interactions with NanoSIMS.

25 May 2018

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Environmental Breviatea harbour mutualistic Arcobacter epibionts

25 May 2018

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Protein-SIP in environmental studies

25 May 2018

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Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

25 May 2018

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MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

25 May 2018

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Tools for the Microbiome: Nano and Beyond

25 May 2018

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MetaQUAST: evaluation of metagenome assemblies

25 May 2018

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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

25 May 2018

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2016 update of the PRIDE database and its related tools

25 May 2018

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Primer and platform effects on 16S rRNA tag sequencing

25 May 2018

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

25 May 2018

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The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

25 May 2018

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High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

25 May 2018

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Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

25 May 2018

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Fast and sensitive protein alignment using DIAMOND

25 May 2018

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The probabilistic convolution tree: efficient exact Bayesian inference for faster LC-MS/MS protein inference

25 May 2018

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What is the total number of protein molecules per cell volume? A call to rethink some published values

25 May 2018

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

25 May 2018

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The binning of metagenomic contigs for microbial physiology of mixed cultures

25 May 2018

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

25 May 2018

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Gene and translation initiation site prediction in metagenomic sequences

25 May 2018

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Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities.

25 May 2018

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Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use.

25 May 2018

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

25 May 2018

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Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics.

25 May 2018

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Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

25 May 2018

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Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data

25 May 2018

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The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

25 May 2018

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Use of fluorescence in situ hybridization and the daime image analysis program for the cultivation-independent quantification of microorganisms in environmental and medical samples

25 May 2018

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BioNumbers--the database of key numbers in molecular and cell biology

25 May 2018

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Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging

25 May 2018

1 reference

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Universal sample preparation method for proteome analysis

25 May 2018

1 reference

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Statistical design of quantitative mass spectrometry-based proteomic experiments

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

The RAST Server: rapid annotations using subsystems technology

25 May 2018

1 reference

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Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Interpretation of shotgun proteomic data: the protein inference problem

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Establishment of exponential growth after a nutritional shift-up in Escherichia coli B/r: accumulation of deoxyribonucleic acid, ribonucleic acid, and protein

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5691128

Growth rate control of protein and nucleic acid content in Streptomyces coelicolor A3(2) and Escherichia coli B/r

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-01544-X

inferred from DOI database lookup

7 January 2021

based on heuristic

Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-01544-X

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41467-017-01544-X

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29146960%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

29146960

1 reference