(Q46133298)

19 December 2017

title

Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing (English)

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19 December 2017

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4

Detlef Weigel

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19 December 2017

author name string

Ray L Hong

series ordinal

1

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19 December 2017

Lynn Hamaguchi

series ordinal

2

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19 December 2017

Maximilian A Busch

series ordinal

3

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19 December 2017

language of work or name

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1 June 2003

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19 December 2017

published in

The Plant Cell

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19 December 2017

volume

15

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19 December 2017

page(s)

1296-1309

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19 December 2017

issue

6

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19 December 2017

Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae).

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1 reference

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Phylogenetic shadowing of primate sequences to find functional regions of the human genome

7 October 2018

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LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development

7 October 2018

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Mosaic organization of orthologous sequences in grass genomes

7 October 2018

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

7 October 2018

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Utility and distribution of conserved noncoding sequences in the grasses

7 October 2018

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A genomic regulatory network for development

7 October 2018

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Building beauty: the genetic control of floral patterning

7 October 2018

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Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.

7 October 2018

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

7 October 2018

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Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

7 October 2018

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Enrichment of regulatory signals in conserved non-coding genomic sequence

7 October 2018

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Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters

7 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The search for meaning in noncoding DNA.

7 October 2018

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Sequence and expression of the hunchback gene in Lucilia sericata: a comparison with other Dipterans.

7 October 2018

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A molecular link between stem cell regulation and floral patterning in Arabidopsis.

7 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Structure and expression of duplicate AGAMOUS orthologues in poplar

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

A MADS domain gene involved in the transition to flowering in Arabidopsis.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Genetic control and evolution of sexually dimorphic characters in Drosophila.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Separable whorl-specific expression and negative regulation by enhancer elements within the AGAMOUS second intron.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Human-mouse genome comparisons to locate regulatory sites

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Active conservation of noncoding sequences revealed by three-way species comparisons

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Divergence of larval morphology between Drosophila sechellia and its sibling species caused by cis-regulatory evolution of ovo/shaven-baby

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

A short history of MADS-box genes in plants.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Evidence for stabilizing selection in a eukaryotic enhancer element.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Molecular phylogenetic studies of Brassica, rorippa, arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Locating regions of differential variability in DNA and protein sequences.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Activation of a floral homeotic gene in Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

PLENA and FARINELLI: redundancy and regulatory interactions between two Antirrhinum MADS-box factors controlling flower development

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The limits of selection during maize domestication.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

MODELTEST: testing the model of DNA substitution

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Identification of class B and class C floral organ identity genes from rice plants.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

A genetic framework for floral patterning.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Expression of multiple AGAMOUS-like genes in male and female flowers of cucumber (Cucumis sativus L.).

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Identification of regulatory regions which confer muscle-specific gene expression.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Discrete spatial and temporal cis-acting elements regulate transcription of the Arabidopsis floral homeotic gene APETALA3.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Multiple AGAMOUS homologs from cucumber and petunia differ in their ability to induce reproductive organ fate

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

A survey of 178 NF-Y binding CCAAT boxes

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

LEAFY expression and flower initiation in Arabidopsis.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The evolution of apical dominance in maize

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The Arabidopsis AGL8 MADS box gene is expressed in inflorescence meristems and is negatively regulated by APETALA1.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Ectopic expression of pMADS3 in transgenic petunia phenocopies the petunia blind mutant.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Complementary floral homeotic phenotypes result from opposite orientations of a transposon at the plena locus of Antirrhinum.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Estimation of evolutionary distances between nucleotide sequences.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Isolation of the tomato AGAMOUS gene TAG1 and analysis of its homeotic role in transgenic plants

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Structural characterization, chromosomal localization and phylogenetic evaluation of two pairs of AGAMOUS-like MADS-box genes from maize.

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

The MADS-box family of transcription factors

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Basic local alignment search tool

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Early flower development in Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Manipulation of flower structure in transgenic tobacco

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

LEAFY controls floral meristem identity in Arabidopsis

7 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156367

Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences

7 October 2018

1 reference

12 December 2020

Evolutionary History of the Grasses

1 reference

12 December 2020

Sex Determination in the Monoecious Species Cucumber Is Confined to Specific Floral Whorls

1 reference

12 December 2020

Using cauliflower to find conserved non-coding regions in Arabidopsis

1 reference

12 December 2020

The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects

1 reference

12 December 2020

Identifiers

DOI

10.1105/TPC.009548

1 reference

19 December 2017

release_oktdupsw75gjzbzvg5szrp46ku

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/oktdupsw75gjzbzvg5szrp46ku

24 November 2022

mapped directly with Wikidata item

0 references

1 reference

19 December 2017