(Q46142882)

20 February 2018

title

A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo (English)

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20 February 2018

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6

Michael J Gilchrist

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20 February 2018

author name string

Ira L Blitz

1

1 reference

20 February 2018

Kitt D Paraiso

2

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20 February 2018

Ilya Patrushev

3

1 reference

20 February 2018

William T Y Chiu

4

1 reference

20 February 2018

Ken W Y Cho

5

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20 February 2018

language of work or name

English

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publication date

27 July 2016

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20 February 2018

published in

Developmental Biology

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20 February 2018

volume

426

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20 February 2018

issue

2

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20 February 2018

page(s)

409-417

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20 February 2018

Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development

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24 May 2018

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Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network.

24 May 2018

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Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients

24 May 2018

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E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation

24 May 2018

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Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program.

24 May 2018

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24 May 2018

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Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus

24 May 2018

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Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification

24 May 2018

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High-resolution analysis of gene activity during the Xenopus mid-blastula transition

24 May 2018

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Spatial expression of transcription factors in Drosophila embryonic organ development

24 May 2018

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A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

A Structural Analysis of DNA Binding by Myelin Transcription Factor 1 Double Zinc Fingers

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency

24 May 2018

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

24 May 2018

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Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences

24 May 2018

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RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

An essential role for transcription before the MBT in Xenopus laevis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

The discovery of zinc fingers and their development for practical applications in gene regulation and genome manipulation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

The genome of the Western clawed frog Xenopus tropicalis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Mammalian ceramide synthases

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

An atlas of combinatorial transcriptional regulation in mouse and man

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

TFCat: the curated catalog of mouse and human transcription factors

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

A census of human transcription factors: function, expression and evolution

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

24 May 2018

1 reference

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Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

DBD--taxonomically broad transcription factor predictions: new content and functionality

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Predicting active site residue annotations in the Pfam database

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

High-throughput transgenesis in Xenopus using I-SceI meganuclease

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Global analysis of the transcriptional network controlling Xenopus endoderm formation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

DBD: a transcription factor prediction database

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Xenopus as a model system to study transcriptional regulatory networks

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Automated generation of heuristics for biological sequence comparison

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

DNA-binding properties of ARID family proteins

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Defining a large set of full-length clones from a Xenopus tropicalis EST project

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

The paired-type homeobox gene Dmbx1 marks the midbrain and pretectum

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

EMBOSS: the European Molecular Biology Open Software Suite

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Asymmetric expression of a novel homeobox gene in vertebrate sensory organs

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Sebox regulates mesoderm formation in early amphibian embryos.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Navigating the Xenopus tropicalis genome

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Detecting putative orthologs.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

A genetic regulatory network for Xenopus mesendoderm formation

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Beta-catenin/Tcf-regulated transcription prior to the midblastula transition.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

Novel mix-family homeobox genes in zebrafish and their differential regulation.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

The events of the midblastula transition in Xenopus are regulated by changes in the cell cycle

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5596316

On the Interpretation of χ 2 from Contingency Tables, and the Calculation of P

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2016.07.002

Amylases in the Human Vagina

7 January 2021

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2016.07.002

10.1016/J.YDBIO.2016.07.002

7 January 2021

Identifiers

DOI

1 reference

20 February 2018

PMC publication ID

5596316

1 reference

20 February 2018

PubMed publication ID

27475627

1 reference

20 February 2018