(Q46262797)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

title

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

1 reference

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Andrea Quattrini

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Luisa F. Dueñas

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Mercer R Brugler

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Iván F Calixto-Botía

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Santiago Herrera

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

David J. Miller

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Gandhi Radis-Baptista

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

Catalina Ramírez-Portilla

2 April 2020

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Juan A. Sanchez

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Catherine S. McFadden

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Estefanía Rodríguez

16

0 references

author name string

Tom C L Bridge

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Danielle M DeLeo

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Sylvain Forêt

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Simon M Y Lee

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Carlos Prada

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

publication date

6 December 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

Molecular Ecology Resources

2 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

volume

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

page(s)

281-295

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

2 April 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

The utility of amplified fragment length polymorphisms in phylogenetics: a comparison of homology within and between genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Phylogenetic signal in mitochondrial and nuclear markers in sea anemones (Cnidaria, Actiniaria).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Molecular systematics of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae) from New Zealand with descriptions of two new species of Keratoisis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

PHYLUCE is a software package for the analysis of conserved genomic loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Elucidating the evolutionary relationships of the Aiptasiidae, a widespread cnidarian-dinoflagellate model system (Cnidaria: Anthozoa: Actiniaria: Metridioidea).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

RAD sequencing enables unprecedented phylogenetic resolution and objective species delimitation in recalcitrant divergent taxa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

ART: a next-generation sequencing read simulator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

An Exon-Capture System for the Entire Class Ophiuroidea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

A genomic glance through the fog of plasticity and diversification in Pocillopora.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Cnidarian phylogenetic relationships as revealed by mitogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

BLAT—The BLAST-Like Alignment Tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

The "naked coral" hypothesis revisited--evidence for and against scleractinian monophyly

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Phylogenomics reveals deep molluscan relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Applications of next-generation sequencing to phylogeography and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Sequence capture of ultraconserved elements from bird museum specimens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Limitations of mitochondrial gene barcoding in Octocorallia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Species boundaries in the absence of morphological, ecological or geographical differentiation in the Red Sea octocoral genus Ovabunda (Alcyonacea: Xeniidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Molecular phylogenetic insights into the evolution of Octocorallia: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Naked corals: skeleton loss in Scleractinia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Use of RAD sequencing for delimiting species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Estimating metazoan divergence times with a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Hidden among sea anemones: the first comprehensive phylogenetic reconstruction of the order Actiniaria (Cnidaria, Anthozoa, Hexacorallia) reveals a novel group of hexacorals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

The evolution of ultraconserved elements with different phylogenetic origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

DNA BARCODING: Barcoding corals: limited by interspecific divergence, not intraspecific variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Contentious relationships in phylogenomic studies can be driven by a handful of genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Fast-evolving mitochondrial DNA in Ceriantharia: a reflection of hexacorallia paraphyly?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Examination of species boundaries in the Acropora cervicornis group (Scleractinia, cnidaria) using nuclear DNA sequence analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Testing the utility of internally transcribed spacer sequences in coral phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Monophyly of Anthozoa (Cnidaria): why do nuclear and mitochondrial phylogenies disagree?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of ‘Hydradephaga’

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12736

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12736

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29131534%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

1 reference