(Q46575827)

English

Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis

scientific article published on 16 June 2005

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis (English)

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

object named as

Rick H Cote

3

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Karen L Carleton

1

object named as

Karen L Carleton

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

author name string

Tyrone C Spady

2

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

publication date

16 June 2005

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

61

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

1

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

75-89

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

https://scigraph.springernature.com/pub.10.1007/s00239-004-0289-z

0 references

Functional diversification of lepidopteran opsins following gene duplication.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0289-Z

21 January 2018

Response properties of cones from the retina of the tiger salamander.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0289-Z

21 January 2018

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0289-Z

21 January 2018

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0289-Z

21 January 2018

Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary analysis of rhodopsin and cone pigments: connecting the three-dimensional structure with spectral tuning and signal transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary traces of functional surfaces along G protein signaling pathway.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Difference in molecular structure of rod and cone visual pigments studied by Fourier transform infrared spectroscopy.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of visual pigment properties in rod and cone phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of amino acid replacements of glycine 121 on transmembrane helix 3 of rhodopsin.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function in rhodopsin: peptide sequences in the cytoplasmic loops of rhodopsin are intimately involved in interaction with rhodopsin kinase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mice lacking G-protein receptor kinase 1 have profoundly slowed recovery of cone-driven retinal responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid residues controlling the properties and functions of rod and cone visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin: insights from recent structural studies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The carboxyl-terminal domain is essential for rhodopsin transport in rod photoreceptors

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectral tuning of avian violet- and ultraviolet-sensitive visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanism of spontaneous pigment activation in retinal cones

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of heregulin symmetry by weighted evolutionary tracing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin mutants discriminate sites important for the activation of rhodopsin kinase and Gt

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Advances in Determination of a High-Resolution Three-Dimensional Structure of Rhodopsin, a Model of G-Protein-Coupled Receptors (GPCRs)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of proteins involved in vertebrate phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of functionally conserved residues with the use of entropy-variability plots

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of rhodopsin dephosphorylation by arrestin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of the Cl(-)-binding site in the human red and green color vision pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic methods for predicting functionally important residues

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ancient colour vision: multiple opsin genes in the ancestral vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three cytoplasmic loops of rhodopsin interact with transducin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differences in transduction between rod and cone photoreceptors: an exploration of the role of calcium homeostasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A regulator of G protein signaling interaction surface linked to effector specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved proline residue at position 189 in cone visual pigments as a determinant of molecular properties different from rhodopsins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin and functional impact of dark noise in retinal cones

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vertebrate photoreceptors

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phototransduction and adaptation in rods, single cones, and twin cones of the striped bass retina: a comparative study.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary predictions of binding surfaces and interactions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive evolution of the African and Indonesian coelacanths to deep-sea environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of vertebrate visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular genetics and the evolution of ultraviolet vision in vertebrates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The spectrum of human rhodopsin disease mutations through the lens of interspecific variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectral tuning in the mammalian short-wavelength sensitive cone pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of retinal guanylate cyclase-activating protein 3 (GCAP3) from zebrafish to man.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNASTAR's Lasergene sequence analysis software.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recent advances in our understanding of rhodopsin and phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of transducin by a Xenopus short wavelength visual pigment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms of spectral tuning in blue cone visual pigments. Visible and raman spectroscopy of blue-shifted rhodopsin mutants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular timescale for vertebrate evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of rhodopsin: A G protein-coupled receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection within sperm-egg adhesion domains of fertilin: an ADAM gene with a potential role in fertilization

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method to predict functional residues in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dimerization of G-protein-coupled receptors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanisms of vertebrate photoreceptor light adaptation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G protein-coupled receptor rhodopsin: a prospectus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular genetics and evolution of red and green color vision in vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin phosphorylation: 30 years later

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping of the amino acids in membrane-embedded helices that interact with the retinal chromophore in bovine rhodopsin.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phototransduction mechanism in retinal rods and cones. The Friedenwald Lecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unusual thermal and conformational properties of the rhodopsin congenital night blindness mutant Thr-94 --> Ile.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low amplification and fast visual pigment phosphorylation as mechanisms characterizing cone photoresponses

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of positive selection acting at the human dopamine receptor D4 gene locus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How color visual pigments are tuned.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The spectral tuning in the short wavelength-sensitive type 2 pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-004-0289-Z

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

ResearchGate publication ID

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