(Q47099658)

8 January 2018

title

Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes (English)

1 reference

8 January 2018

author name string

Michael S Werner

series ordinal

1

1 reference

8 January 2018

Alexander J Ruthenburg

series ordinal

2

1 reference

8 January 2018

publication date

5 August 2015

1 reference

8 January 2018

published in

Cell Reports

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8 January 2018

volume

12

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8 January 2018

issue

7

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8 January 2018

page(s)

1089-1098

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8 January 2018

A unified architecture of transcriptional regulatory elements

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Evf2 (Dlx6as) lncRNA regulates ultraconserved enhancer methylation and the differential transcriptional control of adjacent genes

23 May 2018

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23 May 2018

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Predicting long non-coding RNAs using RNA sequencing

23 May 2018

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Structure and function of long noncoding RNAs in epigenetic regulation

23 May 2018

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Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

23 May 2018

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The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

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Differential analysis of gene regulation at transcript resolution with RNA-seq

23 May 2018

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23 May 2018

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23 May 2018

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Landscape of transcription in human cells

23 May 2018

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Architecture of the human regulatory network derived from ENCODE data

23 May 2018

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23 May 2018

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Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

23 May 2018

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Genome regulation by long noncoding RNAs.

23 May 2018

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Modular regulatory principles of large non-coding RNAs

23 May 2018

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The genomic binding sites of a noncoding RNA.

23 May 2018

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

23 May 2018

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Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

23 May 2018

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YY1 tethers Xist RNA to the inactive X nucleation center

23 May 2018

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Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

23 May 2018

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

23 May 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

23 May 2018

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

23 May 2018

1 reference

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

A unique chromatin signature uncovers early developmental enhancers in humans

23 May 2018

1 reference

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Molecular Signals of Epigenetic States

23 May 2018

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Long noncoding RNAs with enhancer-like function in human cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Mammalian microRNAs predominantly act to decrease target mRNA levels

23 May 2018

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

23 May 2018

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Long noncoding RNA as modular scaffold of histone modification complexes

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Characterization of the RNA content of chromatin

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Widespread transcription at neuronal activity-regulated enhancers

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Co-transcriptional splicing of constitutive and alternative exons

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Evidence of Xist RNA-independent initiation of mouse imprinted X-chromosome inactivation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Evolution and functions of long noncoding RNAs

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Divergent transcription from active promoters

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

The antisense transcriptomes of human cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

RNA exosome depletion reveals transcription upstream of active human promoters

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

23 May 2018

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23 May 2018

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

23 May 2018

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

VISTA Enhancer Browser--a database of tissue-specific human enhancers

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Exon tethering in transcription by RNA polymerase II

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Transcriptional interference between convergent promoters caused by elongation over the promoter

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

RNA regulation: a new genetics?

23 May 2018

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Role of histone H3 lysine 27 methylation in X inactivation

23 May 2018

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Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins

23 May 2018

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Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure

23 May 2018

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NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Requirement for Xist in X chromosome inactivation

23 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

Physical Isolation of Nascent RNA Chains Transcribed by RNA Polymerase II: Evidence for Cotranscriptional Splicing

23 May 2018

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Mechanism of action of dichloro-beta-D-ribofuranosylbenzimidazole: effect on in vitro transcription

23 May 2018

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Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5697714

10.1016/J.CELREP.2015.07.033

15 August 2018

Identifiers

DOI

1 reference

8 January 2018

PMC publication ID

5697714

1 reference

8 January 2018

PubMed publication ID

26257179

1 reference

8 January 2018