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English
Completing bacterial genome assemblies with multiplex MinION sequencing.
scientific article published on 14 September 2017
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
title
Completing bacterial genome assemblies with multiplex MinION sequencing
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
author
Louise M. Judd
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
Claire L. Gorrie
series ordinal
3
1 reference
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Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
Kat Holt
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4
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
author name string
Ryan R Wick
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
publication date
14 September 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
published in
Microbial genomics
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
volume
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
issue
10
1 reference
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Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
page(s)
e000132
1 reference
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Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
describes a project that uses
MUMmer
object named as
MUMmer
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Investigation of chimeric reads using the MinION
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Bandage: interactive visualization of de novo genome assemblies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
A complete bacterial genome assembled de novo using only nanopore sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Whole genome sequencing in clinical and public health microbiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
1 reference
stated in
PubMed Central
reference URL
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retrieved
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Molecular analysis of the Acinetobacter baumannii biofilm-associated protein
1 reference
stated in
PubMed Central
reference URL
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retrieved
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QUAST: quality assessment tool for genome assemblies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
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1 reference
stated in
PubMed Central
reference URL
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1 reference
stated in
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reference URL
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1 reference
stated in
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reference URL
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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ABySS: a parallel assembler for short read sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
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Velvet: algorithms for de novo short read assembly using de Bruijn graphs
1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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Versatile and open software for comparing large genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695209
retrieved
23 May 2018
Identifiers
DOI
10.1099/MGEN.0.000132
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
Fatcat ID
release_jkyrcopcl5hhbknp6mur4lgj2m
1 reference
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Fatcat
reference URL
https://api.fatcat.wiki/v0/release/jkyrcopcl5hhbknp6mur4lgj2m
retrieved
24 November 2022
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mapped directly with Wikidata item
PMC publication ID
5695209
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
PubMed publication ID
29177090
1 reference
stated in
Europe PubMed Central
PMC publication ID
5695209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29177090%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 April 2020
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