(Q47149781)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

title

Microbiome Datasets Are Compositional: And This Is Not Optional (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

Juan José Egozcue

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

3

Vera Pawlowsky-Glahn

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

author name string

Jean M Macklaim

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

publication date

15 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Microbiology

5 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

page(s)

2224

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young

5 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Normalization and microbial differential abundance strategies depend upon data characteristics

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Uncovering the Horseshoe Effect in Microbial Analyses

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

A phylogenetic transform enhances analysis of compositional microbiota data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Expanding the UniFrac Toolbox

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Compositional data analysis of the microbiome: fundamentals, tools, and challenges

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Intricacies of assessing the human microbiome in epidemiologic studies

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

It's all relative: analyzing microbiome data as compositions

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

How should we measure proportionality on relative gene expression data?

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Analysis of composition of microbiomes: a novel method for studying microbial composition

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Sparse and compositionally robust inference of microbial ecological networks

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Proportionality: a valid alternative to correlation for relative data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Waste not, want not: why rarefying microbiome data is inadmissible

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Inferring correlation networks from genomic survey data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Differential expression analysis for sequence count data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

UniFrac: an effective distance metric for microbial community comparison

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

A scaling normalization method for differential expression analysis of RNA-seq data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

A broken promise: microbiome differential abundance methods do not control the false discovery rate

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5695134

Minimum Population Sizes for Species Conservation

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFMICB.2017.02224

zCompositions — R package for multivariate imputation of left-censored data under a compositional approach

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFMICB.2017.02224

propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29187837

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2017.02224

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187837%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

PubMed publication ID

29187837

1 reference