(Q47564808)

6 July 2018

title

A single-cell survey of the small intestinal epithelium (English)

1 reference

6 July 2018

single cell transcriptomics

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

author

Orit Rozenblatt-Rosen

17

Orit Rozenblatt-Rosen

1 reference

6 July 2018

21

Aviv Regev

1 reference

6 July 2018

Semir Beyaz

12

0 references

Moshe Biton

2

Moshe Biton

1 reference

6 July 2018

Michael R. Howitt

9

Michael R Howitt

1 reference

6 July 2018

Itay Tirosh

11

Itay Tirosh

1 reference

6 July 2018

Danielle Dionne

13

Danielle Dionne

1 reference

6 July 2018

Raktima Raychowdhury

15

Raktima Raychowdhury

1 reference

6 July 2018

Wendy S Garrett

16

Wendy S Garrett

1 reference

6 July 2018

Ramnik J Xavier

20

Ramnik J Xavier

1 reference

6 July 2018

Ömer H. Yilmaz

19

Omer Yilmaz

1 reference

6 July 2018

Karthik Shekhar

5

Karthik Shekhar

1 reference

6 July 2018

author name string

Adam L Haber

1

1 reference

6 July 2018

Noga Rogel

3

1 reference

6 July 2018

Rebecca H Herbst

4

1 reference

6 July 2018

Christopher Smillie

6

1 reference

6 July 2018

Grace Burgin

7

1 reference

6 July 2018

Toni M Delorey

8

1 reference

6 July 2018

Yarden Katz

10

1 reference

6 July 2018

Mei Zhang

14

1 reference

6 July 2018

Hai Ning Shi

18

1 reference

6 July 2018

language of work or name

English

0 references

publication date

8 November 2017

1 reference

6 July 2018

external data available at URL

number of pages

7

1 reference

based on heuristic

inferred from page(s)

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92332

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

6 July 2018

volume

551

1 reference

6 July 2018

issue

7680

1 reference

6 July 2018

page(s)

333-339

1 reference

6 July 2018

describes a project that uses

small intestine

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

SMART-Seq

1 reference

A curated database reveals trends in single-cell transcriptomics

https://scigraph.springernature.com/pub.10.1038/nature24489

7 February 2021

exact match

0 references

cites work

Enteroendocrine cells-sensory sentinels of the intestinal environment and orchestrators of mucosal immunity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem-cell self-renewal

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Intestinal tuft cells: epithelial sentinels linking luminal cues to the immune system.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Tuft cells, taste-chemosensory cells, orchestrate parasite type 2 immunity in the gut.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Intestinal epithelial tuft cells initiate type 2 mucosal immunity to helminth parasites

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Enteroendocrine Cells: Chemosensors in the Intestinal Epithelium

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Single-cell messenger RNA sequencing reveals rare intestinal cell types

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Mapping early fate determination in Lgr5+ crypt stem cells using a novel Ki67-RFP allele

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Coinfection with an intestinal helminth impairs host innate immunity against Salmonella enterica serovar Typhimurium and exacerbates intestinal inflammation in mice

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Intestinal epithelial cells: regulators of barrier function and immune homeostasis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The bile acid TGR5 membrane receptor: from basic research to clinical application

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Full-length RNA-seq from single cells using Smart-seq2.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Pentraxins: structure, function, and role in inflammation

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Accounting for technical noise in single-cell RNA-seq experiments.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Microfold (M) cells: important immunosurveillance posts in the intestinal epithelium

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Co-localisation and secretion of glucagon-like peptide 1 and peptide YY from primary cultured human L cells.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Identification of novel genes selectively expressed in the follicle-associated epithelium from the meta-analysis of transcriptomics data from multiple mouse cell and tissue populations.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

NIH Image to ImageJ: 25 years of image analysis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Peyer's patch M cells derived from Lgr5(+) stem cells require SpiB and are induced by RankL in cultured "miniguts".

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

AnimalTFDB: a comprehensive animal transcription factor database

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Expansion of Paneth cell population in response to enteric Salmonella enterica serovar Typhimurium infection

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

GATA factors regulate proliferation, differentiation, and gene expression in small intestine of mature mice

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Intestinal epithelial serum amyloid A modulates bacterial growth in vitro and pro-inflammatory responses in mouse experimental colitis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Gene ontology analysis for RNA-seq: accounting for selection bias

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Free fatty acid receptors act as nutrient sensors to regulate energy homeostasis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Dietary modulation and structure prediction of rat mucosal pentraxin (Mptx) protein and loss of function in humans

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Comprehensive gene expression profiling of Peyer's patch M cells, villous M-like cells, and intestinal epithelial cells.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Maps of random walks on complex networks reveal community structure

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

GPR119, a novel G protein-coupled receptor target for the treatment of type 2 diabetes and obesity

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Identification of stem cells in small intestine and colon by marker gene Lgr5

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The serotonin signaling system: from basic understanding to drug development for functional GI disorders

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The role of leptin and ghrelin in the regulation of food intake and body weight in humans: a review

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Adjusting batch effects in microarray expression data using empirical Bayes methods

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

RELMbeta/FIZZ2 is a goblet cell-specific immune-effector molecule in the gastrointestinal tract

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The zinc-finger transcription factor Klf4 is required for terminal differentiation of goblet cells in the colon.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Mex3a Marks a Slowly Dividing Subpopulation of Lgr5+ Intestinal Stem Cells.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Induced Quiescence of Lgr5+ Stem Cells in Intestinal Organoids Enables Differentiation of Hormone-Producing Enteroendocrine Cells.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Remarks on Parallel Analysis.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Machine learning. Clustering by fast search and find of density peaks.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The gut as a sensory organ.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

The role of peptide YY in appetite regulation and obesity.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Murine intestinal cells expressing Trpm5 are mostly brush cells and express markers of neuronal and inflammatory cells

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Gfi1b:green fluorescent protein knock-in mice reveal a dynamic expression pattern of Gfi1b during hematopoiesis that is largely complementary to Gfi1.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022292

Human leucine-rich repeat proteins: a genome-wide bioinformatic categorization and functional analysis in innate immunity

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE24489

Examining the role of Paneth cells in the small intestine by lineage ablation in transgenic mice

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE24489

inferred from DOI database lookup

7 January 2021

based on heuristic

Epithelial microRNAs regulate gut mucosal immunity via epithelium-T cell crosstalk

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE24489

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE24489

1 reference

6 July 2018

journals/nature/HaberBRHSSBDHKT17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 July 2018

PubMed publication ID

29144463

1 reference

6 July 2018