(Q48198330)

9 February 2018

title

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. (English)

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9 February 2018

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9

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9 February 2018

Amanda M. Hulse-Kemp

11

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9 February 2018

Qiong Wang

Qiong Wang

30

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Jiedan Chen

Jiedan Chen

6

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Chen Xiao-Ya

Xiaoya Chen

24

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Danny J Llewellyn

Danny J Llewellyn

26

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David M. Stelly

David M Stelly

10

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Elizabeth S. Dennis

25

Elizabeth Dennis

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9 February 2018

Wangzhen Guo

52

Wangzhen Guo

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9 February 2018

Tianzhen Zhang

1

Tianzhen Zhang

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9 February 2018

Huaitong Wu

33

Huaitong Wu

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9 February 2018

author name string

Yan Hu

2

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9 February 2018

Wenkai Jiang

3

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9 February 2018

Lei Fang

4

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9 February 2018

Xueying Guan

5

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9 February 2018

Jinbo Zhang

7

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9 February 2018

Christopher A Saski

8

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9 February 2018

Qun Wan

12

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9 February 2018

Bingliang Liu

13

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9 February 2018

Chunxiao Liu

14

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9 February 2018

Sen Wang

15

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9 February 2018

Mengqiao Pan

16

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9 February 2018

Yangkun Wang

17

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9 February 2018

Dawei Wang

18

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9 February 2018

Wenxue Ye

19

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9 February 2018

Lijing Chang

20

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9 February 2018

Wenpan Zhang

21

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9 February 2018

Qingxin Song

22

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9 February 2018

Ryan C Kirkbride

23

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9 February 2018

Daniel G Peterson

27

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9 February 2018

Peggy Thaxton

28

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9 February 2018

Don C Jones

29

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9 February 2018

Xiaoyang Xu

31

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9 February 2018

Hua Zhang

32

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9 February 2018

Lei Zhou

34

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9 February 2018

Gaofu Mei

35

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9 February 2018

Shuqi Chen

36

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9 February 2018

Yue Tian

37

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9 February 2018

Dan Xiang

38

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9 February 2018

Xinghe Li

39

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9 February 2018

Jian Ding

40

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9 February 2018

Qiyang Zuo

41

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9 February 2018

Linna Tao

42

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9 February 2018

Yunchao Liu

43

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9 February 2018

Ji Li

44

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9 February 2018

Yu Lin

45

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9 February 2018

Yuanyuan Hui

46

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9 February 2018

Zhisheng Cao

47

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9 February 2018

Caiping Cai

48

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9 February 2018

Xiefei Zhu

49

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9 February 2018

Zhi Jiang

50

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9 February 2018

Baoliang Zhou

51

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9 February 2018

Ruiqiang Li

53

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9 February 2018

Z Jeffrey Chen

54

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9 February 2018

publication date

20 April 2015

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9 February 2018

published in

Nature Biotechnology

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9 February 2018

volume

33

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9 February 2018

issue

5

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9 February 2018

page(s)

531-537

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9 February 2018

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

copyright license

start time

20 April 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1038/nbt.3207

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cites work

Toward sequencing cotton (Gossypium) genomes.

1 reference

Genome sequence of the cultivated cotton Gossypium arboreum

21 January 2018

1 reference

The draft genome of a diploid cotton Gossypium raimondii

21 January 2018

1 reference

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

21 January 2018

1 reference

New World tetraploid cottons contain Old World cytoplasm

21 January 2018

1 reference

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

21 January 2018

1 reference

The genome of the mesopolyploid crop species Brassica rapa

21 January 2018

1 reference

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

21 January 2018

1 reference

The tobacco genome sequence and its comparison with those of tomato and potato

21 January 2018

1 reference

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

A preliminary analysis of genome structure and composition in Gossypium hirsutum

21 January 2018

1 reference

Localization of high level of sequence conservation and divergence regions in cotton.

21 January 2018

1 reference

Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton.

21 January 2018

1 reference

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.

21 January 2018

1 reference

Analysis of the bread wheat genome using whole-genome shotgun sequencing

21 January 2018

1 reference

The evolutionary consequences of polyploidy

21 January 2018

1 reference

The role of hybridization in plant speciation

21 January 2018

1 reference

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

21 January 2018

1 reference

Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

21 January 2018

1 reference

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

21 January 2018

1 reference

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

21 January 2018

1 reference

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

21 January 2018

1 reference

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

21 January 2018

1 reference

Homoeolog expression bias and expression level dominance in allopolyploids.

21 January 2018

1 reference

Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.

21 January 2018

1 reference

Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa

21 January 2018

1 reference

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

21 January 2018

1 reference

Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome

21 January 2018

1 reference

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

21 January 2018

1 reference

Polyploidy and small RNA regulation of cotton fiber development

21 January 2018

1 reference

GhMYB25-like: a key factor in early cotton fibre development.

21 January 2018

1 reference

Control of plant trichome development by a cotton fiber MYB gene

21 January 2018

1 reference

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

21 January 2018

1 reference

How cotton fibers elongate: a tale of linear cell-growth mode.

21 January 2018

1 reference

Cotton fiber: a powerful single-cell model for cell wall and cellulose research

21 January 2018

1 reference

Developmental and molecular physiological evidence for the role of phosphoenolpyruvate carboxylase in rapid cotton fibre elongation.

21 January 2018

1 reference

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.

21 January 2018

1 reference

Arabidopsis and tobacco plants ectopically expressing the soybean antiquitin-like ALDH7 gene display enhanced tolerance to drought, salinity, and oxidative stress.

21 January 2018

1 reference

NAC proteins: regulation and role in stress tolerance.

21 January 2018

1 reference

Genome sequencing reveals insights into physiology and longevity of the naked mole rat

21 January 2018

1 reference

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

21 January 2018

1 reference

Phytozome: a comparative platform for green plant genomics

21 January 2018

1 reference

Basic local alignment search tool

21 January 2018

1 reference

Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup.

21 January 2018

1 reference

21 January 2018

GeneWise and Genomewise

1 reference

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

21 January 2018

1 reference

Prediction of complete gene structures in human genomic DNA

21 January 2018

1 reference

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

21 January 2018

1 reference

Assembling genes from predicted exons in linear time with dynamic programming.

21 January 2018

1 reference

Gene finding in novel genomes

21 January 2018

1 reference

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

21 January 2018

1 reference

The Pfam protein families database

21 January 2018

1 reference

InterPro in 2011: new developments in the family and domain prediction database

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.

21 January 2018

1 reference

HMMER web server: interactive sequence similarity searching

21 January 2018

1 reference

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

Data, information, knowledge and principle: back to metabolism in KEGG

21 January 2018

1 reference

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

Rfam: annotating non-coding RNAs in complete genomes

21 January 2018

1 reference

Infernal 1.0: inference of RNA alignments

21 January 2018

1 reference

MIPS PlantsDB: a database framework for comparative plant genome research

21 January 2018

1 reference

Rate variation among nuclear genes and the age of polyploidy in Gossypium.

21 January 2018

1 reference

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 January 2018

1 reference

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

21 January 2018

1 reference

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

21 January 2018

1 reference

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 January 2018

1 reference

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

21 January 2018

1 reference

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

21 January 2018

1 reference

12 December 2020

Gene expression and metabolite profiles of cotton fiber during cell elongation and secondary cell wall synthesis.

1 reference

12 December 2020

Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes

1 reference

12 December 2020

Polyploid formation in cotton is not accompanied by rapid genomic changes

1 reference

12 December 2020

MapChart: software for the graphical presentation of linkage maps and QTLs

1 reference

12 December 2020

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

1 reference

12 December 2020

Identifiers

DOI

10.1038/NBT.3207

1 reference

9 February 2018

release_bpxa6u6lxfamrj2xpvgbspo27m

Fatcat ID

0 references

PubMed ID

25893781

1 reference

9 February 2018