(Q53164380)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

Facilitated diffusion in the presence of obstacles on the DNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

David Gomez

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

author name string

David Gomez

series ordinal

1

1 reference

12 May 2018

http://europepmc.org/abstract/MED/27048915

language of work or name

English

0 references

publication date

1 April 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

Physical Chemistry Chemical Physics

31 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

volume

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

issue

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

page(s)

11184-11192

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

The regulation of bacterial transcription initiation

31 March 2020

cites work

1 reference

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

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The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion

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The lac repressor-operator interaction. 3. Kinetic studies

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

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Reactions of the eco RV restriction endonuclease with fluorescent oligodeoxynucleotides: identical equilibrium constants for binding to specific and non-specific DNA.

21 January 2018

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Monomeric and dimeric bZIP transcription factor GCN4 bind at the same rate to their target DNA site

21 January 2018

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Probing transcription factor dynamics at the single-molecule level in a living cell

21 January 2018

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The lac repressor displays facilitated diffusion in living cells.

21 January 2018

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Target search of N sliding proteins on a DNA

21 January 2018

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How do site-specific DNA-binding proteins find their targets?

21 January 2018

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Generalized facilitated diffusion model for DNA-binding proteins with search and recognition states

21 January 2018

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Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

21 January 2018

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Physics of protein-DNA interactions: mechanisms of facilitated target search

21 January 2018

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Visualization of single molecules of RNA polymerase sliding along DNA.

21 January 2018

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One- and three-dimensional pathways for proteins to reach specific DNA sites

21 January 2018

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How do proteins locate specific targets in DNA?

21 January 2018

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RNA polymerase approaches its promoter without long-range sliding along DNA

21 January 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

21 January 2018

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Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

21 January 2018

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Intracellular facilitated diffusion: searchers, crowders, and blockers.

21 January 2018

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Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

21 January 2018

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Large changes in cytoplasmic biopolymer concentration with osmolality indicate that macromolecular crowding may regulate protein-DNA interactions and growth rate in osmotically stressed Escherichia coli K-12.

21 January 2018

1 reference

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Tracer diffusion of globular proteins in concentrated protein solutions

21 January 2018

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Macromolecular diffusion in crowded solutions

21 January 2018

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Effect of macromolecular crowding on reaction rates: a computational and theoretical study

21 January 2018

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What is the true enzyme kinetics in the biological system? An investigation of macromolecular crowding effect upon enzyme kinetics of glucose-6-phosphate dehydrogenase.

21 January 2018

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Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

21 January 2018

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Effects of macromolecular crowding on protein folding and aggregation

21 January 2018

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Molecular crowding enhances native state stability and refolding rates of globular proteins

21 January 2018

1 reference

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Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders

21 January 2018

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Macromolecular crowding as a regulator of gene transcription

21 January 2018

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Effects of macromolecular crowding on genetic networks

21 January 2018

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Molecular crowding shapes gene expression in synthetic cellular nanosystems

21 January 2018

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Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

21 January 2018

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RNA polymerase active center: the molecular engine of transcription

21 January 2018

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Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis

21 January 2018

1 reference

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Histones and histone modifications

21 January 2018

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Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

21 January 2018

1 reference

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Obstacles may facilitate and direct DNA search by proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6CP00307A

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6CP00307A

Molecular crowding effect on dynamics of DNA-binding proteins search for their targets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC6CP00307A

How DNA coiling enhances target localization by proteins

21 January 2018

1 reference

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Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling

21 January 2018

1 reference

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Facilitated diffusion with DNA coiling.

21 January 2018

1 reference

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Facilitated Diffusion of DNA-Binding Proteins

21 January 2018

1 reference

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Biochemical reactions in crowded environments: revisiting the effects of volume exclusion with simulations

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1039/C6CP00307A

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27048915%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference