(Q54190747)

26 May 2018

title

NOVOPlasty: de novo assembly of organelle genomes from whole genome data. (English)

1 reference

26 May 2018

main subject

whole genome sequencing

1 reference

Nicolas Dierckxsens

1

0 references

Guillaume Smits

object named as

Guillaume Smits

series ordinal

3

0 references

Patrick Mardulyn

series ordinal

2

object named as

Patrick Mardulyn

1 reference

26 May 2018

language of work or name

English

0 references

publication date

1 February 2017

1 reference

26 May 2018

published in

Nucleic Acids Research

1 reference

26 May 2018

volume

45

1 reference

26 May 2018

issue

4

1 reference

26 May 2018

page(s)

e18

1 reference

26 May 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

15 February 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?

26 May 2018

1 reference

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Echinochloa chloroplast genomes: insights into the evolution and taxonomic identification of two weedy species

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

De novo assembly of the complete organelle genome sequences of azuki bean (Vigna angularis) using next-generation sequencers

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Characterizing and measuring bias in sequence data

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

26 May 2018

1 reference

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

26 May 2018

1 reference

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Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Sequencing of chloroplast genome using whole cellular DNA and solexa sequencing technology

26 May 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

26 May 2018

1 reference

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The NCBI Taxonomy database

26 May 2018

1 reference

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Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

26 May 2018

1 reference

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Isolation of mitochondrial DNA.

26 May 2018

1 reference

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Dispersed repetitive sequences in the chloroplast genome of Douglas-fir

26 May 2018

1 reference

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Extending assembly of short DNA sequences to handle error.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Assembling millions of short DNA sequences using SSAKE.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

Methods for obtaining and analyzing whole chloroplast genome sequences.

13 August 2018

1 reference

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Structure and evolution of the mitochondrial control region of leaf beetles (Coleoptera: Chrysomelidae): a hierarchical analysis of nucleotide sequence variation

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389512

A network-based approach to identify substrate classes of bacterial glycosyltransferases.

13 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW955

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW955

1 reference

26 May 2018

PMCID

5389512

1 reference

26 May 2018

PubMed ID

28204566

1 reference

26 May 2018