Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q55092675)
Watch
English
Sequential regulatory activity prediction across chromosomes with convolutional neural networks.
scientific article published on 27 March 2018
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
title
Sequential regulatory activity prediction across chromosomes with convolutional neural networks
(English)
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
main subject
convolutional neural network
1 reference
based on heuristic
inferred from title
author
David R Kelley
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
Cory Y McLean
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
author name string
Yakir A Reshef
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
Maxwell Bileschi
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
David Belanger
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
Jasper Snoek
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
publication date
27 March 2018
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
published in
Genome Research
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
volume
28
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
issue
5
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
page(s)
739-750
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
cites work
An Expanded View of Complex Traits: From Polygenic to Omnigenic
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Regulatory feedback from nascent RNA to chromatin and transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Open Targets: a platform for therapeutic target identification and validation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
A synergistic DNA logic predicts genome-wide chromatin accessibility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
RNA splicing is a primary link between genetic variation and disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
The 3D Genome as Moderator of Chromosomal Communication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
A global reference for human genetic variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Partitioning heritability by functional annotation using genome-wide association summary statistics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Predicting effects of noncoding variants with deep learning-based sequence model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
A method to predict the impact of regulatory variants from DNA sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
The role of regulatory variation in complex traits and disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Integrative analysis of 111 reference human epigenomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Genomic variation. Impact of regulatory variation from RNA to protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
LD Score regression distinguishes confounding from polygenicity in genome-wide association studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Genetic and epigenetic fine mapping of causal autoimmune disease variants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Predicting the human epigenome from DNA motifs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Enhanced regulatory sequence prediction using gapped k-mer features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
CNV-guided multi-read allocation for ChIP-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
A promoter-level mammalian expression atlas
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
The functional consequences of variation in transcription factor binding.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Understanding transcriptional regulation by integrative analysis of transcription factor binding data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Systematic localization of common disease-associated variation in regulatory DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
An integrated encyclopedia of DNA elements in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Dynamics and memory of heterochromatin in living cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Fast gapped-read alignment with Bowtie 2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Summarizing and correcting the GC content bias in high-throughput sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Fingolimod (FTY720): discovery and development of an oral drug to treat multiple sclerosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Transcriptional enhancers in animal development and evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Discovery and characterization of chromatin states for systematic annotation of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Model-based analysis of ChIP-Seq (MACS)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Transposable elements and the evolution of regulatory networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Quantifying similarity between motifs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
TDAG8 is a proton-sensing and psychosine-sensitive G-protein-coupled receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Regulation of gene expression by alternative promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
22 June 2018
Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
13 August 2018
Genetic effects on gene expression across human tissues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5932613
retrieved
13 August 2018
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/29588361
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GR.227819.117
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
PMCID
5932613
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
PubMed ID
29588361
1 reference
stated in
Europe PubMed Central
PMCID
5932613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29588361%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit