(Q55463997)

http://europepmc.org/abstract/PMC/3023303

12 July 2018

title

PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

0 references

3

R. Henrik Nilsson

1 reference

http://europepmc.org/abstract/PMC/3023303

12 July 2018

Urmas Kõljalg

19

object named as

Urmas Kõljalg

2 references

12 July 2018

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

17

Jaak Truu

1 reference

12 July 2018

12

Ivika Ostonen

1 reference

12 July 2018

15

Kadri Põldmaa

1 reference

12 July 2018

2

Leho Tedersoo

2 references

12 July 2018

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

4

Kai Vellak

1 reference

12 July 2018

11

Olavi Kurina

2 references

12 July 2018

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

1

Kessy Abarenkov

1 reference

12 July 2018

18

Karl-Henrik Larsson

1 reference

12 July 2018

Marko Prous

8

0 references

Irja Saar

object named as

Irja Saar

5

0 references

Vilmar Veldre

6

object named as

Vilmar Veldre

1 reference

13 May 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

Erast Parmasto

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Anne Aan

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Margus Ots

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Janno Jõgeva

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Siim Halapuu

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Märt Toots

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Kai Vellak

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

Karl-Henrik Larsson

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

publication date

16 December 2010

1 reference

http://europepmc.org/abstract/PMC/3023303

12 July 2018

published in

Evolutionary Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

page(s)

189-196

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

Global sequencing: a review of current molecular data and new methods available to assess microbial diversity

13 May 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

A constructive step towards selecting a DNA barcode for fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota).

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

QIIME allows analysis of high-throughput community sequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Accurate determination of microbial diversity from 454 pyrosequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Next-generation DNA sequencing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Accuracy and quality of massively parallel DNA pyrosequencing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Global patterns in bacterial diversity

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

A higher-level phylogenetic classification of the Fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

A modern approach to rotiferan phylogeny: combining morphological and molecular data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Genome sequencing in microfabricated high-density picolitre reactors

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Prokaryote diversity and taxonomy: current status and future challenges

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

An open source chimera checker for the fungal ITS region

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

The UNITE database for molecular identification of fungi--recent updates and future perspectives

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Interwoven branches of the plant and fungal trees of life.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

DNA data. Proposal to 'Wikify' GenBank meets stiff resistance

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023303

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

12 August 2018

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.FUNECO.2010.05.002

Identifiers

DOI

10.4137/EBO.S6271

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC3023303&resulttype=core&format=json

13 May 2020

1 reference