(Q57044806)

1

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Matthew M Parks

2

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Manuel F Juette

3

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Roger B Altman

5

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Jordana K Thibado

6

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C Theresa Vincent

7

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Scott C Blanchard

8

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Chad M. Kurylo

1

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Matthew M. Parks

2

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Manuel F. Juette

3

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Roger B. Altman

5

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Jordana K. Thibado

6

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C. Theresa Vincent

7

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Scott C. Blanchard

Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli

8

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language of work or name

English

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publication date

2 October 2018

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October 2018

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published in

Cell Reports

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volume

25

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issue

1

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page(s)

236-248.e6

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cites work

1 reference

12 December 2020

A functional pseudoknot in 16S ribosomal RNA

1 reference

12 December 2020

Model for the three-dimensional folding of 16 S ribosomal RNA

1 reference

12 December 2020

Evolution in bacteria: evidence for a universal substitution rate in cellular genomes

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

Structurally distinct, stage-specific ribosomes occur in Plasmodium

1 reference

12 December 2020

Model for the regulation of mRNA translation applied to haemoglobin synthesis

1 reference

12 December 2020

Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli

1 reference

12 December 2020

rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation

1 reference

12 December 2020

Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli

1 reference

12 December 2020

The complete genome sequence of Escherichia coli K-12

1 reference

12 December 2020

Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons.

1 reference

12 December 2020

Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media

1 reference

12 December 2020

The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit

1 reference

12 December 2020

A new mathematical model for relative quantification in real-time RT-PCR

1 reference

12 December 2020

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

1 reference

12 December 2020

Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli

1 reference

12 December 2020

RelE, a global inhibitor of translation, is activated during nutritional stress

1 reference

12 December 2020

Rates and consequences of recombination between rRNA operons

1 reference

12 December 2020

Global gene expression in Escherichia coli biofilms

1 reference

12 December 2020

The correlation between rDNA copy number and genome size in eukaryotes

1 reference

12 December 2020

tRNA dynamics on the ribosome during translation

1 reference

12 December 2020

tRNA selection and kinetic proofreading in translation

1 reference

12 December 2020

Systematic interpretation of genetic interactions using protein networks

1 reference

12 December 2020

The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficiencies

1 reference

12 December 2020

Affinity purification of in vivo-assembled ribosomes for in vitro biochemical analysis.

1 reference

12 December 2020

RNA structure: reading the ribosome

1 reference

12 December 2020

Motility influences biofilm architecture in Escherichia coli.

1 reference

12 December 2020

Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes

1 reference

12 December 2020

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

1 reference

12 December 2020

Decline in ribosomal fidelity contributes to the accumulation and stabilization of the master stress response regulator sigmaS upon carbon starvation

1 reference

12 December 2020

Translational regulation of the Escherichia coli stress factor RpoS: a role for SsrA and Lon

1 reference

12 December 2020

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

1 reference

12 December 2020

Heterogeneous rRNAs are differentially expressed during the morphological development of Streptomyces coelicolor

1 reference

12 December 2020

Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures

1 reference

12 December 2020

Transcription profiling of the stringent response in Escherichia coli

1 reference

12 December 2020

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

1 reference

12 December 2020

Principles of single-channel kinetic analysis

1 reference

12 December 2020

Control of RpoS in global gene expression of Escherichia coli in minimal media.

1 reference

12 December 2020

Nature, nurture, or chance: stochastic gene expression and its consequences

1 reference

12 December 2020

Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs

1 reference

12 December 2020

The transcription unit architecture of the Escherichia coli genome

1 reference

12 December 2020

The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE

1 reference

12 December 2020

RNA-Seq gene expression estimation with read mapping uncertainty

1 reference

12 December 2020

Update on the Keio collection of Escherichia coli single-gene deletion mutants

1 reference

12 December 2020

Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

1 reference

12 December 2020

Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome

1 reference

12 December 2020

Andromeda: a peptide search engine integrated into the MaxQuant environment

1 reference

12 December 2020

Growth rate regulation in Escherichia coli

1 reference

12 December 2020

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

1 reference

12 December 2020

Regulation of alternative sigma factor use.

1 reference

12 December 2020

The RpoS-mediated general stress response in Escherichia coli

1 reference

12 December 2020

Rare codons play a positive role in the expression of the stationary phase sigma factor RpoS (σ(S)) in Escherichia coli

1 reference

12 December 2020

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

1 reference

12 December 2020

rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

1 reference

12 December 2020

Repetitive DNA and next-generation sequencing: computational challenges and solutions

1 reference

12 December 2020

The complex of tmRNA-SmpB and EF-G on translocating ribosomes

1 reference

12 December 2020

Allosteric control of the ribosome by small-molecule antibiotics.

1 reference

12 December 2020

The GEM mapper: fast, accurate and versatile alignment by filtration

1 reference

12 December 2020

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

1 reference

12 December 2020

Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis

1 reference

12 December 2020

RNA polymerase and the ribosome: the close relationship

1 reference

12 December 2020

The immunosuppressive drug azathioprine inhibits biosynthesis of the bacterial signal molecule cyclic-di-GMP by interfering with intracellular nucleotide pool availability.

1 reference

12 December 2020

High saturated fatty acids proportion in Escherichia coli enhances the activity of ice-nucleation protein from Pantoea ananatis.

1 reference

12 December 2020

Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity

1 reference

12 December 2020

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

1 reference

12 December 2020

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

1 reference

12 December 2020

Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis

1 reference

12 December 2020

Biofilm formation in the 96-well microtiter plate

1 reference

12 December 2020

Stress-induced remodeling of the bacterial proteome

1 reference

12 December 2020

The metabolic enzyme AdhE controls the virulence of Escherichia coli O157:H7

1 reference

12 December 2020

A model for sigma factor competition in bacterial cells

1 reference

12 December 2020

Transcriptional analysis of different stress response genes in Escherichia coli strains subjected to sodium chloride and lactic acid stress.

1 reference

12 December 2020

Complete Genome Sequence of Escherichia coli BW25113.

1 reference

12 December 2020

Heterogeneity of the translational machinery: Variations on a common theme.

1 reference

12 December 2020

limma powers differential expression analyses for RNA-sequencing and microarray studies

1 reference

12 December 2020

Engineered ribosomal RNA operon copy-number variants of E. coli reveal the evolutionary trade-offs shaping rRNA operon number

1 reference

12 December 2020

Novel R pipeline for analyzing Biolog Phenotypic MicroArray data

1 reference

12 December 2020

Recent functional insights into the role of (p)ppGpp in bacterial physiology

1 reference

12 December 2020

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

1 reference

12 December 2020

Pathways to Specialized Ribosomes: The Brussels Lecture

1 reference

12 December 2020

The role of motility and chemotaxis in the bacterial colonization of protected surfaces

1 reference

12 December 2020

Genome Sequence and Analysis of Escherichia coli MRE600, a Colicinogenic, Nonmotile Strain that Lacks RNase I and the Type I Methyltransferase, EcoKI

1 reference

12 December 2020

E. coli metabolic protein aldehyde-alcohol dehydrogenase-E binds to the ribosome: a unique moonlighting action revealed

1 reference

12 December 2020

Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale

1 reference

12 December 2020

Multiperspective smFRET reveals rate-determining late intermediates of ribosomal translocation.

1 reference

12 December 2020

Ribosome-dependent activation of stringent control

1 reference

12 December 2020

Mechanism of endonuclease cleavage by the HigB toxin

1 reference

12 December 2020

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors

1 reference

12 December 2020

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

1 reference

12 December 2020

ATP-Dependent Persister Formation in Escherichia coli

1 reference

12 December 2020

Architecture of a transcribing-translating expressome

1 reference

12 December 2020

Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A.

1 reference

12 December 2020

Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.

1 reference

12 December 2020

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.

1 reference

12 December 2020

Subtractional Heterogeneity: A Crucial Step toward Defining Specialized Ribosomes.

1 reference

12 December 2020

Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements.

1 reference

12 December 2020

An exact test for comparing a fixed quantitative property between gene sets

1 reference

12 December 2020

Ribosomopathies: There's strength in numbers.

1 reference

12 December 2020

Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.

1 reference

12 December 2020

Global Analysis of the E. coli Toxin MazF Reveals Widespread Cleavage of mRNA and the Inhibition of rRNA Maturation and Ribosome Biogenesis

1 reference

12 December 2020

The Discovery of Ribosome Heterogeneity and Its Implications for Gene Regulation and Organismal Life

1 reference

12 December 2020