(Q57272901)

5

object named as

Kuo-Chen Chou

0 references

author name string

Wei Chen

1

0 references

Pengmian Feng

2

0 references

Hui Ding

Crystal structure of the nucleosome core particle at 2.8 A resolution

3

0 references

publication date

March 2016

0 references

published in

Genomics

0 references

volume

107

0 references

issue

2-3

0 references

page(s)

69-75

0 references

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Chromatin organization marks exon-intron structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

The organization of nucleosomes around splice sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A high-resolution atlas of nucleosome occupancy in yeast

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Dynamic regulation of nucleosome positioning in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Genomic sequence is highly predictive of local nucleosome depletion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A genomic code for nucleosome positioning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Nucleosome positions predicted through comparative genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Predicting human nucleosome occupancy from primary sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Nucleosome positioning signals in genomic DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

DNA physical properties determine nucleosome occupancy from yeast to fly.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Correlation between the flexibility and periodic dinucleotide patterns in yeast nucleosomal DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

DNA Physical Parameters Modulate Nucleosome Positioning in the Saccharomyces cerevisiae Genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iPPI-Esml: An ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Some remarks on protein attribute prediction and pseudo amino acid composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Recent progress in protein subcellular location prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

CD-HIT: accelerated for clustering the next-generation sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A hierarchical combination of factors shapes the genome-wide topography of yeast meiotic recombination initiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

OriDB: a DNA replication origin database

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Generic eukaryotic core promoter prediction using structural features of DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

DNAlive: a tool for the physical analysis of DNA at the genomic scale

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Prediction of Protein Structural Classes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A vector projection approach to predicting HIV protease cleavage sites in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

A sequence‐coupled vector‐projection model for predicting the specificity of GalNAc‐transferase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Predicting human immunodeficiency virus protease cleavage sites in proteins by a discriminant function method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

An alternate-subsite-coupled model for predicting HIV protease cleavage sites in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Predicting cleavability of peptide sequences by HIV protease via correlation-angle approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Studies on the specificity of HIV protease: an application of Markov chain theory

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Prediction of human immunodeficiency virus protease cleavage sites in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Using subsite coupling to predict signal peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iNR-Drug: predicting the interaction of drugs with nuclear receptors in cellular networking

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iHyd-PseAAC: predicting hydroxyproline and hydroxylysine in proteins by incorporating dipeptide position-specific propensity into pseudo amino acid composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iLoc-Virus: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Some remarks on predicting multi-label attributes in molecular biosystems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

The DNA-encoded nucleosome organization of a eukaryotic genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

iRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Spo11 and the Formation of DNA Double-Strand Breaks in Meiosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Meiotic recombination hot spots and cold spots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

Impact of chromatin structure on sequence variability in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

The impact of nucleosome positioning on the organization of replication origins in eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005

High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication origins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2015.12.005