(Q58003559)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23521305%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Efficient numerical reconstruction of protein folding kinetics with partial path sampling and pathlike variables (English)

1 reference

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26 February 2020

0 references

1

1 reference

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26 February 2020

Giorgio Saladino

2

1 reference

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26 February 2020

Titus S van Erp

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23521305%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Francesco Luigi Gervasio

4

1 reference

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26 February 2020

author name string

T. S. van Erp

3

0 references

F. L. Gervasio

4

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language of work or name

English

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publication date

8 March 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23521305%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

published in

Physical Review Letters

1 reference

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26 February 2020

volume

110

1 reference

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26 February 2020

issue

10

1 reference

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26 February 2020

page(s)

108106

1 reference

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How fast-folding proteins fold

26 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations

21 January 2018

1 reference

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Forward flux sampling for rare event simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

Rate constants for diffusive processes by partial path sampling.

21 January 2018

1 reference

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Computing time scales from reaction coordinates by milestoning.

21 January 2018

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From A to B in free energy space.

21 January 2018

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Efficiency analysis of reaction rate calculation methods using analytical models I: The two-dimensional sharp barrier.

21 January 2018

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Designing a 20-residue protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

21 January 2018

1 reference

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All-Atom Structure Prediction and Folding Simulations of a Stable Protein

21 January 2018

1 reference

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Phylogeny of protein-folding trajectories reveals a unique pathway to native structure

21 January 2018

1 reference

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Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins

21 January 2018

1 reference

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Kinetic network study of the diversity and temperature dependence of Trp-Cage folding pathways: combining transition path theory with stochastic simulations

21 January 2018

1 reference

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Trp-cage: Folding free energy landscape in explicit water

21 January 2018

1 reference

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Sampling the multiple folding mechanisms of Trp-cage in explicit solvent

21 January 2018

1 reference

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Rate constant and reaction coordinate of Trp-cage folding in explicit water

21 January 2018

1 reference

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Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water

21 January 2018

1 reference

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Protonation/deprotonation effects on the stability of the Trp-cage miniprotein

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

A bias-exchange approach to protein folding

21 January 2018

1 reference

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

21 January 2018

1 reference

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PLUMED: A portable plugin for free-energy calculations with molecular dynamics

21 January 2018

1 reference

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Kinetics and mechanism of the unfolding native-to-loop transition of Trp-cage in explicit solvent via optimized forward flux sampling simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.110.108106

10.1103/PHYSREVLETT.110.108106

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23521305%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference