(Q64013335)

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Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)

scientific article published on 10 May 2019

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scholarly article

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25 April 2020

Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes) (English)

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25 April 2020

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molecular phylogenetics

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1

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25 April 2020

Roberta Graboski

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Nikolai L Orlov

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Juan Camilo Arredondo

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Paulo Roberto Machado-Filho

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Kristin Mahlow

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Ana Bottallo Quadros

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Mark Wilkinson

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Ya-Ping Zhang

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Robert W Murphy

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Giovanna G Montingelli

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Felipe G Grazziotin

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publication date

10 May 2019

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e0216148

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25 April 2020

copyright license

Creative Commons Attribution 4.0 International

10 May 2019

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April 2022 Public Data File from Crossref

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Chromosomal polymorphism in three species of Indian snakes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Karyological studies on six species of Indian snakes (Colubridae: Reptilia)

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https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Majority-rule reduced consensus trees and their use in bootstrapping

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The development of the skull in Acrochordus granulatus (Schneider) (Reptilia: Serpentes), with special consideration of the otico-occipital complex.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Higher-level relationships of caenophidian snakes inferred from four nuclear and mitochondrial genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Phylogenetics of advanced snakes (Caenophidia) based on four mitochondrial genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Missing data, incomplete taxa, and phylogenetic accuracy

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Phylogenomics of eukaryotes: impact of missing data on large alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Phylogeny of the Colubroidea (Serpentes): new evidence from mitochondrial and nuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Large temperature drop across the Eocene-Oligocene transition in central North America

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Molecular evidence for a rapid late-Miocene radiation of Australasian venomous snakes (Elapidae, Colubroidea).

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

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The Taming of the Skew: Estimating Proper Confidence Intervals for Divergence Dates

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Evolutionary origin and development of snake fangs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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A nesting of vipers: Phylogeny and historical biogeography of the Viperidae (Squamata: Serpentes).

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Giant boid snake from the Palaeocene neotropics reveals hotter past equatorial temperatures

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Global cooling during the eocene-oligocene climate transition

1 reference

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12 December 2020

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Comments on the paper by Pleijel et al. (2008): Vouching for GenBank

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Best practices for justifying fossil calibrations

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Extinction, ecological opportunity, and the origins of global snake diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bayesian phylogenetics with BEAUti and the BEAST 1.7

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

treePL: divergence time estimation using penalized likelihood for large phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An overview of the South American fossil squamates

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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The earliest colubroid-dominated snake fauna from Africa: perspectives from the Late Oligocene Nsungwe Formation of southwestern Tanzania

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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New data on the morphology and distribution of the enigmatic Schouteden’s sun snake, Helophis schoutedeni (de Witte, 1922) from the Congo Basin

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia).

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular-clock methods for estimating evolutionary rates and timescales

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new genus and species of xenodermatid snake (Squamata: Caenophidia: Xenodermatidae) from northern Lao People’s Democratic Republic

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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The origin of snakes: revealing the ecology, behavior, and evolutionary history of early snakes using genomics, phenomics, and the fossil record

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary stability of sex chromosomes in snakes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Systematics of Nothopsini (Serpentes, Dipsadidae), with a new species of Synophis from the Pacific Andean slopes of southwestern Ecuador

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenomic analyses reveal novel relationships among snake families

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversification in vipers: Phylogenetic relationships, time of divergence and shifts in speciation rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visual Pigments, Ocular Filters and the Evolution of Snake Vision.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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A revision and key for the tribe Diaphorolepidini (Serpentes: Dipsadidae) and checklist for the genus Synophis

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

1 reference

https://pubmed.ncbi.nlm.nih.gov/31075128

12 December 2020

based on heuristic

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Identifiers

10.1371/JOURNAL.PONE.0216148

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25 April 2020

1 reference

Europe PubMed Central

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25 April 2020

1 reference

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