(Q64068069)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30958812%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

title

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis (English)

1 reference

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2 May 2020

main subject

modeling and simulation

0 references

0 references

1

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2 May 2020

Joëlle Barido-Sottani

3

1 reference

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2 May 2020

Sebastian Duchene

4

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2 May 2020

Mathieu Fourment

5

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2 May 2020

Joseph Heled

7

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2 May 2020

Graham Jones

8

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2 May 2020

Denise Kühnert

9

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2 May 2020

Nicola De Maio

10

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2 May 2020

Michael Matschiner

11

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2 May 2020

Fábio K Mendes

12

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2 May 2020

Nicola F. Müller

13

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2 May 2020

Huw A Ogilvie

14

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2 May 2020

Louis du Plessis

15

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2 May 2020

Igor Siveroni

19

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2 May 2020

Marc A. Suchard

20

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2 May 2020

Chi Zhang

23

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2 May 2020

Tanja Stadler

24

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2 May 2020

Alexei J. Drummond

25

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2 May 2020

17

Andrew Rambaut

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2 May 2020

Alexandra Gavryushkina

6

object named as

Alexandra Gavryushkina

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2 May 2020

author name string

Timothy G Vaughan

2

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2 May 2020

Alex Popinga

16

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2 May 2020

David Rasmussen

18

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2 May 2020

Chieh-Hsi Wu

21

1 reference

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2 May 2020

Dong Xie

22

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2 May 2020

language of work or name

English

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publication date

8 April 2019

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PLOS Computational Biology

2 May 2020

published in

1 reference

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2 May 2020

volume

15

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2 May 2020

issue

4

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2 May 2020

page(s)

e1006650

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Creative Commons Attribution 4.0 International

2 May 2020

copyright license

start time

8 April 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species

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Microsatellite mutation models: insights from a comparison of humans and chimpanzees

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Relaxed phylogenetics and dating with confidence

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Discordance of species trees with their most likely gene trees.

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12 December 2020

Estimating a binary character's effect on speciation and extinction

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12 December 2020

BEAST: Bayesian evolutionary analysis by sampling trees

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12 December 2020

Bayesian inference of fine-scale recombination rates using population genomic data

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12 December 2020

The Austronesian Basic Vocabulary Database: from bioinformatics to lexomics

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Gene tree discordance, phylogenetic inference and the multispecies coalescent

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On incomplete sampling under birth-death models and connections to the sampling-based coalescent

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Bayesian phylogeography finds its roots

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Bayesian inference of species trees from multilocus data

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Phylogeography takes a relaxed random walk in continuous space and time

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Unifying vertical and nonvertical evolution: a stochastic ARG-based framework

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Choosing among partition models in Bayesian phylogenetics

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Sampling-through-time in birth-death trees

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Inference of homologous recombination in bacteria using whole-genome sequences

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Improving marginal likelihood estimation for Bayesian phylogenetic model selection

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Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo

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Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia.

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Inference of human population history from individual whole-genome sequences

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Calibrated tree priors for relaxed phylogenetics and divergence time estimation

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Estimating the basic reproductive number from viral sequence data.

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Complex population dynamics and the coalescent under neutrality

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Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.

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The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

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A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

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12 December 2020

Mapping the origins and expansion of the Indo-European language family

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Bayesian selection of nucleotide substitution models and their site assignments

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Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

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A stochastic simulator of birth-death master equations with application to phylodynamics

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Evolutionary rates and HBV: issues of rate estimation with Bayesian molecular methods.

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Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

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The influence of gene flow on species tree estimation: a simulation study

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Posterior predictive Bayesian phylogenetic model selection

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Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

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Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

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BEAST 2: a software platform for Bayesian evolutionary analysis

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Efficient Bayesian inference under the structured coalescent

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The genomic substrate for adaptive radiation in African cichlid fish

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Infectious disease: tough choices to reduce Ebola transmission

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Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration

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Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models

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West African Ebola epidemic after one year--slowing but not yet under control

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Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent.

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Which Phylogenetic Networks are Merely Trees with Additional Arcs?

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PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

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New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation

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Synthesis of phylogeny and taxonomy into a comprehensive tree of life

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Total-Evidence Dating under the Fossilized Birth-Death Process

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Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

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Gene Tree Discordance Causes Apparent Substitution Rate Variation

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Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent

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Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

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Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent.

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Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

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After Ebola in West Africa — Unpredictable Risks, Preventable Epidemics

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Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes

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Evolution of the immune system influences speciation rates in teleost fishes

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Phylogeography by diffusion on a sphere: whole world phylogeography

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12 December 2020

SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent

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12 December 2020

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12 December 2020

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12 December 2020

Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins.

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12 December 2020

Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes

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10.1371/JOURNAL.PCBI.1006650

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30958812%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/BouckaertVBDFGH19

2 May 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30958812%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference