(Q82658749)

English

Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions

scientific article published on 01 December 2008

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018585%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018585%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Trifolium subterraneum

object named as

Trifolium subterraneum

1 reference

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inferred from title

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Jennifer V Kuehl

7

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17 January 2020

author name string

Zhengqiu Cai

1

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17 January 2020

Mary Guisinger

2

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17 January 2020

Hyi-Gyung Kim

3

1 reference

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17 January 2020

Elizabeth Ruck

4

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17 January 2020

John C Blazier

5

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17 January 2020

Vanity McMurtry

6

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17 January 2020

Jeffrey Boore

8

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17 January 2020

Robert K Jansen

9

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17 January 2020

publication date

1 December 2008

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17 January 2020

Journal of Molecular Evolution

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17 January 2020

67

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17 January 2020

6

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17 January 2020

696-704

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17 January 2020

https://scigraph.springernature.com/pub.10.1007/s00239-008-9180-7

0 references

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Consed: a graphical tool for sequence finishing

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Rapid and accurate pyrosequencing of angiosperm plastid genomes

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The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families

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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

1 reference

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Automatic annotation of organellar genomes with DOGMA

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

1 reference

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Rearrangements in the chloroplast genomes of mung bean and pea

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Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).

1 reference

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The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals

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Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

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Base-calling of automated sequencer traces using phred. II. Error probabilities

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Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes

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Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

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Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

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The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

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Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea

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The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages

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GRIMM: genome rearrangements web server

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The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae

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Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

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Methods for obtaining and analyzing whole chloroplast genome sequences.

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The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

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Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

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The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

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Dispersed repeats and structural reorganization in subclover chloroplast DNA

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Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable euoenothera plastomes

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The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

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