(Q85194938)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

2'-amino-modified ribonucleotides as probes for local interactions within RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

2′-Amino-Modified Ribonucleotides as Probes for Local Interactions Within RNA (English)

1 reference

10.1016/S0076-6879(09)68006-X

DOI

https://api.crossref.org/works/10.1016/S0076-6879(09)68006-X

2 August 2024

author name string

James L. Hougland

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20946767

2 August 2024

Joseph A. Piccirilli

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20946767

2 August 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20946767

2 August 2024

publication date

17 November 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

published in

Methods in Enzymology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

volume

468

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

page(s)

107-125

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

Catalytic role of 2'-hydroxyl groups within a group II intron active site

15 February 2020

cites work

1 reference

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7 January 2021

2'-Fluoro- and 2'-amino-2'-deoxynucleoside 5'-triphosphates as substrates for T7 RNA polymerase

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7 January 2021

Oligonucleotide duplexes containing 2'-amino-2'-deoxycytidines: thermal stability and chemical reactivity

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7 January 2021

Deoxyribozymes: useful DNA catalysts in vitro and in vivo

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7 January 2021

The ribosomal peptidyl transferase

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7 January 2021

Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage

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7 January 2021

Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA.

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7 January 2021

Catalytic strategies of self-cleaving ribozymes

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7 January 2021

Improved synthesis of 2'-amino-2'-deoxyguanosine and its phosphoramidite.

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7 January 2021

Syntheses of (2')3'-15N-amino-(2')3'-deoxyguanosine and determination of their pKa values by 15N NMR spectroscopy

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7 January 2021

Nucleotide analogues to investigate RNA structure and function

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7 January 2021

Structural inference of native and partially folded RNA by high-throughput contact mapping

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7 January 2021

Modifying the specificity of an RNA backbone contact

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7 January 2021

Site-specific incorporation of nitroxide spin-labels into 2′-positions of nucleic acids

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7 January 2021

Investigation of RNA-protein and RNA-metal ion interactions by electron paramagnetic resonance spectroscopy. The HIV TAR-Tat motif

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7 January 2021

RNA hydration: a detailed look

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7 January 2021

Kinetic characterization of the second step of group II intron splicing: role of metal ions and the cleavage site 2'-OH in catalysis

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7 January 2021

New strategies for exploring RNA's 2'-OH expose the importance of solvent during group II intron catalysis

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7 January 2021

A second divalent metal ion in the group II intron reaction center

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7 January 2021

A mutation in T7 RNA polymerase that facilitates promoter clearance

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7 January 2021

Stitching together RNA tertiary architectures

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7 January 2021

Contributions of 2'-hydroxyl groups of the RNA substrate to binding and catalysis by the Tetrahymena ribozyme. An energetic picture of an active site composed of RNA.

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7 January 2021

The importance of being ribose at the cleavage site in the Tetrahymena ribozyme reaction

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7 January 2021

An important 2'-OH group for an RNA-protein interaction

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7 January 2021

An atomic mutation cycle for exploring RNA's 2'-hydroxyl group

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7 January 2021

Functional identification of catalytic metal ion binding sites within RNA.

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7 January 2021

The 2'-hydroxyl group of the guanosine nucleophile donates a functionally important hydrogen bond in the tetrahymena ribozyme reaction.

1 reference

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7 January 2021

Mechanism of ribose 2'-group discrimination by an RNA polymerase

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7 January 2021

Transition state chirality and role of the vicinal hydroxyl in the ribosomal peptidyl transferase reaction.

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7 January 2021

Tagging DNA mismatches by selective 2'-amine acylation

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7 January 2021

Chemical interrogation of mismatches in DNA-DNA and DNA-RNA duplexes under nonstringent conditions by selective 2'-amine acylation

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7 January 2021

Mechanics of DNA flexibility visualized by selective 2'-amine acylation at nucleotide bulges

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7 January 2021

Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

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7 January 2021

Scaleable and efficient synthesis of 2'-deoxy-2'-N-phthaloyl nucleoside phosphoramidites for oligonucleotide synthesis

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7 January 2021

Energetics of hydrogen bond networks in RNA: hydrogen bonds surrounding G+1 and U42 are the major determinants for the tertiary structure stability of the hairpin ribozyme

1 reference

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7 January 2021

Dissection of the role of the conserved G.U pair in group I RNA self-splicing

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7 January 2021

Joining of RNAs by splinted ligation

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7 January 2021

Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

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7 January 2021

Quantitating tertiary binding energies of 2' OH groups on the P1 duplex of the Tetrahymena ribozyme: intrinsic binding energy in an RNA enzyme

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7 January 2021

A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs

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7 January 2021

Catalysis by RNase P RNA: unique features and unprecedented active site plasticity

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7 January 2021

Thermodynamic and structural characterization of 2'-nitrogen-modified RNA duplexes.

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7 January 2021

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7 January 2021

Chemical probing of RNA by nucleotide analog interference mapping

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7 January 2021

Spin labeling of oligonucleotides with the nitroxide TPA and use of PELDOR, a pulse EPR method, to measure intramolecular distances

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7 January 2021

2'-mercaptonucleotide interference reveals regions of close packing within folded RNA molecules

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7 January 2021

Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2'-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme

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7 January 2021

An unconventional origin of metal-ion rescue and inhibition in the Tetrahymena group I ribozyme reaction

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7 January 2021

Protonated 2'-aminoguanosine as a probe of the electrostatic environment of the active site of the Tetrahymena group I ribozyme

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7 January 2021

Three metal ions at the active site of the Tetrahymena group I ribozyme

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7 January 2021

Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction

1 reference

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7 January 2021

Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

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7 January 2021

RNA tertiary folding monitored by fluorescence of covalently attached pyrene

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7 January 2021

Multiple folding pathways for the P4-P6 RNA domain

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7 January 2021

Metal ion interaction with cosubstrate in self-splicing of group I introns

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7 January 2021

Fluorescence of covalently attached pyrene as a general RNA folding probe

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7 January 2021

Multiple magnesium ions in the ribonuclease P reaction mechanism

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7 January 2021

RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis

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7 January 2021

A decade of protein engineering on ribonuclease T1--atomic dissection of the enzyme-substrate interactions

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7 January 2021

A hydrogen-bonding triad stabilizes the chemical transition state of a group I ribozyme

1 reference

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7 January 2021

Importance of exocyclic base functional groups of central core guanosines for hammerhead ribozyme activity

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7 January 2021

MODIFIED OLIGONUCLEOTIDES: Synthesis and Strategy for Users

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7 January 2021

Substrate-assisted catalysis of peptide bond formation by the ribosome

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7 January 2021

A new metal ion interaction in the Tetrahymena ribozyme reaction revealed by double sulfur substitution

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7 January 2021

The role of the cleavage site 2'-hydroxyl in the Tetrahymena group I ribozyme reaction

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7 January 2021

The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain

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7 January 2021

10.1016/S0076-6879(09)68006-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946767%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

1 reference