(Q88721056)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

0 references

Alexandre Lomsadze

1

1 reference

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27 March 2020

Karl Gemayel

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Shiyuyun Tang

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Mark Borodovsky

series ordinal

4

1 reference

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27 March 2020

publication date

17 May 2018

1 reference

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27 March 2020

1 reference

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27 March 2020

volume

28

1 reference

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27 March 2020

issue

7

1 reference

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27 March 2020

page(s)

1079-1089

1 reference

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Translation of the prophage lambda cl transcript

27 March 2020

cites work

1 reference

12 December 2020

Assessment of protein coding measures

1 reference

12 December 2020

Expression of peptide chain release factor 2 requires high-efficiency frameshift.

1 reference

12 December 2020

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

1 reference

12 December 2020

Detection of new genes in a bacterial genome using Markov models for three gene classes

1 reference

12 December 2020

Quantitative analysis of ribosome binding sites in E.coli

1 reference

12 December 2020

Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs

1 reference

12 December 2020

A genomic perspective on protein families

1 reference

12 December 2020

Cyano2Dbase updated: linkage of 234 protein spots to corresponding genes through N-terminal microsequencing

1 reference

12 December 2020

EcoGene: a genome sequence database for Escherichia coli K-12.

1 reference

12 December 2020

Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.

1 reference

12 December 2020

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

1 reference

12 December 2020

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

1 reference

12 December 2020

Gibbs Recursive Sampler: finding transcription factor binding sites

1 reference

12 December 2020

The COG database: an updated version includes eukaryotes

1 reference

12 December 2020

Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1.

1 reference

12 December 2020

Translation initiation of cyanobacterial rbcS mRNAs requires the 38-kDa ribosomal protein S1 but not the Shine-Dalgarno sequence: development of a cyanobacterial in vitro translation system.

1 reference

12 December 2020

Identifying bacterial genes and endosymbiont DNA with Glimmer

1 reference

12 December 2020

Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis

1 reference

12 December 2020

Prevalence of transcription promoters within archaeal operons and coding sequences.

1 reference

12 December 2020

A single-base resolution map of an archaeal transcriptome

1 reference

12 December 2020

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

1 reference

12 December 2020

The primary transcriptome of the major human pathogen Helicobacter pylori

1 reference

12 December 2020

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

12 December 2020

Ab initio gene identification in metagenomic sequences

1 reference

12 December 2020

TubercuList--10 years after

1 reference

12 December 2020

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

1 reference

12 December 2020

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment

1 reference

12 December 2020

Proteogenomic analysis of bacteria and archaea: a 46 organism case study

1 reference

12 December 2020

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

1 reference

12 December 2020

Large variations in bacterial ribosomal RNA genes.

1 reference

12 December 2020

1 reference

12 December 2020

Defining the bacteroides ribosomal binding site

1 reference

12 December 2020

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

1 reference

12 December 2020

RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi

1 reference

12 December 2020

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

1 reference

12 December 2020

Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

1 reference

12 December 2020

RefSeq microbial genomes database: new representation and annotation strategy

1 reference

12 December 2020

An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium

1 reference

12 December 2020

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

1 reference

12 December 2020

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

1 reference

12 December 2020

Conservation of transcription start sites within genes across a bacterial genus

1 reference

12 December 2020

Differential RNA-seq: the approach behind and the biological insight gained

1 reference

12 December 2020

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

1 reference

12 December 2020

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

1 reference

12 December 2020

A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing

1 reference

12 December 2020

Expanded microbial genome coverage and improved protein family annotation in the COG database

1 reference

12 December 2020

Quantitative bacterial transcriptomics with RNA-seq

1 reference

12 December 2020

Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus

1 reference

12 December 2020

Initiation of mRNA translation in bacteria: structural and dynamic aspects

1 reference

12 December 2020

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

1 reference

12 December 2020

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape.

1 reference

12 December 2020

Scaling laws predict global microbial diversity

1 reference

12 December 2020

NCBI prokaryotic genome annotation pipeline

1 reference

12 December 2020

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

1 reference

12 December 2020

Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1.

1 reference

12 December 2020

Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.230615.117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29773659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

29773659

1 reference