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A systems approach to infectious disease
scientific article published on 14 February 2020
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Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
review article
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stated in
Europe PubMed Central
title
A systems approach to infectious disease
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
main subject
infectious diseases
1 reference
based on heuristic
inferred from title
infectious disease
1 reference
based on heuristic
inferred from title
author
Nevan Krogan
series ordinal
5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
author name string
Manon Eckhardt
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
Judd F Hultquist
series ordinal
2
1 reference
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Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
Robyn M Kaake
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
Ruth Hüttenhain
series ordinal
4
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
publication date
14 February 2020
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
published in
Nature Reviews Genetics
1 reference
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Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
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Coming of age: ten years of next-generation sequencing technologies
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Proteomics Tracing the Footsteps of Infectious Disease
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ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection
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Combined chemical genetics and data-driven bioinformatics approach identifies receptor tyrosine kinase inhibitors as host-directed antimicrobials
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Host blood RNA signatures predict the outcome of tuberculosis treatment.
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Enterovirus pathogenesis requires the host methyltransferase SETD3
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Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis
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Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection
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Global landscape of HIV-human protein complexes
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An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses
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Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes
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Global landscape of cell envelope protein complexes in Escherichia coli.
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based on heuristic
inferred from DOI database lookup
Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Combined Human Genome-wide RNAi and Metabolite Analyses Identify IMPDH as a Host-Directed Target against Chlamydia Infection.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SREBP-dependent lipidomic reprogramming as a broad-spectrum antiviral target
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Dengue virus induces and requires glycolysis for optimal replication
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Minimum Information About a Microarray Experiment (MIAME)--successes, failures, challenges
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
NCBI GEO: archive for functional genomics data sets--update
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
FAIRsharing as a community approach to standards, repositories and policies
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein function in the post-genomic era.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Toward predictive models of mammalian cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Network science of biological systems at different scales: A review.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Network approaches and applications in biology
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Tidy Data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Overview of biological database mapping services for interoperation between different 'omics' datasets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
HIV-1 nomenclature proposal
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2008 Revision)
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Data integration and predictive modeling methods for multi-omics datasets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The High-Throughput Analyses Era: Are We Ready for the Data Struggle?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Cytoscape: a software environment for integrated models of biomolecular interaction networks
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Graphlet-based Characterization of Directed Networks
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
More Is Better: Recent Progress in Multi-Omics Data Integration Methods
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Machine learning and its applications to biology
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
KEGG: kyoto encyclopedia of genes and genomes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Gene ontology: tool for the unification of biology
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Representing virus-host interactions and other multi-organism processes in the Gene Ontology.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Gene Ontology Resource: 20 years and still GOing strong
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Network-based stratification of tumor mutations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DGIdb 3.0: a redesign and expansion of the drug-gene interaction database.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DrugBank 5.0: a major update to the DrugBank database for 2018.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pharmacogenomics knowledge for personalized medicine
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The ChEMBL database in 2017
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Modifying culture conditions in chemical library screening identifies alternative inhibitors of mycobacteria
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A funder-imposed data publication requirement seldom inspired data sharing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Public availability of published research data in high-impact journals
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Availability of Research Data Declines Rapidly with Article Age
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Empirical study of data sharing by authors publishing in PLoS journals
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The FAIR Guiding Principles for scientific data management and stewardship
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The variable quality of metadata about biological samples used in biomedical experiments
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BioModels: ten-year anniversary
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BioModels: Content, Features, Functionality, and Use
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
NDEx: A Community Resource for Sharing and Publishing of Biological Networks
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BioSamples database: an updated sample metadata hub
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-020-0212-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
[Late reduplication of chromosomes in cultured aneuploid Chinese hamster cells]
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/32060427
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Host-pathogen interactions: redefining the basic concepts of virulence and pathogenicity
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/32060427
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Data integration in biological research: an overview
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/32060427
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/S41576-020-0212-5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
PMC publication ID
7839161
0 references
PubMed publication ID
32060427
1 reference
stated in
Europe PubMed Central
PubMed publication ID
32060427
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32060427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 April 2020
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