(Q60345940)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

title

Tracking virus outbreaks in the twenty-first century (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

0 references

1

1 reference

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14 April 2020

Jason T. Ladner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

Andrew Rambaut

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

Edward C. Holmes

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

Kristian G. Andersen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

4

Oliver G Pybus

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

author name string

Philippe Lemey

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

publication date

13 December 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

page(s)

10-19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/s41564-018-0296-2

14 April 2020

exact match

0 references

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A novel coronavirus associated with severe acute respiratory syndrome

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7 January 2021

Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia

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7 January 2021

Emergence of a novel swine-origin influenza A (H1N1) virus in humans

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7 January 2021

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

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7 January 2021

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

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7 January 2021

Genomic Insights into Zika Virus Emergence and Spread.

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7 January 2021

Origins of major human infectious diseases

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7 January 2021

Pandemics: spend on surveillance, not prediction

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7 January 2021

Rapid evolution of RNA genomes

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7 January 2021

Rates of evolutionary change in viruses: patterns and determinants

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7 January 2021

Physical mapping of the restriction fragments obtained from bacteriophage T4 dC-DNA with the restriction endonucleases SmaI, KpnI and BglII

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7 January 2021

Molecular epidemiology of dengue 3 viruses and genetic relatedness among dengue 3 strains isolated from patients with mild or severe form of dengue fever in French Polynesia

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7 January 2021

Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States

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7 January 2021

Generation of virus genetic lineages during an outbreak of poliomyelitis

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7 January 2021

Limited sequence heterogeneity among biologically distinct human immunodeficiency virus type 1 isolates from individuals involved in a clustered infectious outbreak

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7 January 2021

Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness

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7 January 2021

Molecular epidemiology of HIV transmission in a dental practice

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7 January 2021

Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin

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7 January 2021

Molecular epidemiology of a coxsackievirus B3 outbreak

1 reference

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7 January 2021

Next-generation DNA sequencing

1 reference

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7 January 2021

Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa

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7 January 2021

Towards a genomics-informed, real-time, global pathogen surveillance system

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7 January 2021

Bayesian molecular clock dating of species divergences in the genomics era.

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7 January 2021

The early molecular epidemiology of the swine-origin A/H1N1 human influenza pandemic.

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7 January 2021

Timing the ancestor of the HIV-1 pandemic strains

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7 January 2021

Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Inference of viral evolutionary rates from molecular sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Impact of the tree prior on estimating clock rates during epidemic outbreaks.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

1 reference

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7 January 2021

Using genomics data to reconstruct transmission trees during disease outbreaks

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7 January 2021

Pandemic potential of a strain of influenza A (H1N1): early findings

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7 January 2021

Phylodynamics of infectious disease epidemics

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7 January 2021

Inference for nonlinear epidemiological models using genealogies and time series

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7 January 2021

Estimating the basic reproductive number from viral sequence data.

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7 January 2021

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

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7 January 2021

Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data

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7 January 2021

Phylodynamic analysis of ebola virus in the 2014 sierra leone epidemic

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7 January 2021

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

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7 January 2021

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

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7 January 2021

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

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7 January 2021

A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data

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7 January 2021

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus.

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7 January 2021

Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001

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7 January 2021

Molecular evidence of sexual transmission of Ebola virus

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7 January 2021

Reduced evolutionary rate in reemerged Ebola virus transmission chains

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7 January 2021

Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days

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7 January 2021

Measurably evolving pathogens in the genomic era

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7 January 2021

When are pathogen genome sequences informative of transmission events?

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7 January 2021

Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba

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7 January 2021

Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data

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7 January 2021

Toward a quantitative understanding of viral phylogeography

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7 January 2021

Virus genomes reveal factors that spread and sustained the Ebola epidemic

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7 January 2021

Efficient Bayesian inference under the structured coalescent

1 reference

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7 January 2021

The Structured Coalescent and its Approximations

1 reference

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7 January 2021

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

1 reference

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7 January 2021

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Yellow fever virus in Haemagogus leucocelaenus and Aedes serratus mosquitoes, southern Brazil, 2008.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Genomic and epidemiological monitoring of yellow fever virus transmission potential

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Human Adaptation of Ebola Virus during the West African Outbreak

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Fruit bats as reservoirs of Ebola virus

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Wave-like spread of Ebola Zaire

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Puzzling Origins of the Ebola Outbreak in the Democratic Republic of the Congo, 2014.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Roots, Not Parachutes: Research Collaborations Combat Outbreaks

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Data sharing: Make outbreak research open access

1 reference

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7 January 2021

Preprints: An underutilized mechanism to accelerate outbreak science.

1 reference

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7 January 2021

Zika-microcephaly paper sparks data-sharing confusion

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7 January 2021

A predictive fitness model for influenza

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7 January 2021

Mapping the antigenic and genetic evolution of influenza virus

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7 January 2021

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses.

1 reference

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7 January 2021

Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia

1 reference

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7 January 2021

MERS-CoV spillover at the camel-human interface.

1 reference

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7 January 2021

Zika virus in the Americas: Early epidemiological and genetic findings

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Functional Characterization of Adaptive Mutations during the West African Ebola Virus Outbreak.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Field Validation of the ReEBOV Antigen Rapid Test for Point-of-Care Diagnosis of Ebola Virus Infection

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

ReEBOV Antigen Rapid Test kit for point-of-care and laboratory-based testing for Ebola virus disease: a field validation study

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Rapid and specific detection of Asian- and African-lineage Zika viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

The application of microfluidic devices for viral diagnosis in developing countries

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Electrical detection of single viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Field-Effect Transistor Biosensor for Rapid Detection of Ebola Antigen.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Novel graphene-based biosensor for early detection of Zika virus infection

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Paper-based synthetic gene networks

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Nucleic acid detection with CRISPR-Cas13a/C2c2

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Field-deployable viral diagnostics using CRISPR-Cas13.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Depletion of Abundant Sequences by Hybridization (DASH): using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Capturing diverse microbial sequence with comprehensive and scalable probe design

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Real-time, portable genome sequencing for Ebola surveillance

1 reference

https://api.crossref.org/works/10.1038%2FS41564-018-0296-2

7 January 2021

Mammalian reservoirs of arenaviruses.

1 reference

12 December 2020

1 reference

12 December 2020

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

1 reference

12 December 2020

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

1 reference

12 December 2020

Transmission of Ebola viruses: what we know and what we do not know

1 reference

12 December 2020

Possible sexual transmission of Ebola virus - Liberia, 2015.

1 reference

12 December 2020

Policy statement on data sharing by WHO in the context of public health emergencies (as of 13 April 2016

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12 December 2020

Emerging Concepts of Data Integration in Pathogen Phylodynamics

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12 December 2020

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

1 reference

12 December 2020

Zika virus evolution and spread in the Americas

1 reference

12 December 2020

10.1038/S41564-018-0296-2

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30546099%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

1 reference