(Q38674782)

5 September 2017

Bayesian molecular clock dating of species divergences in the genomics era. (English)

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5 September 2017

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2

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5 September 2017

Mario dos Reis

1

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author name string

Ziheng Yang

series ordinal

3

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5 September 2017

21 December 2015

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5 September 2017

Nature Reviews Genetics

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5 September 2017

17

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5 September 2017

71-80

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5 September 2017

2

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https://scigraph.springernature.com/pub.10.1038/nrg.2015.8

5 September 2017

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cites work

PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Emile Zuckerkandl, Linus Pauling, and the molecular evolutionary clock, 1959-1965.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The modern molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular clocks: four decades of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Determining divergence times of the major kingdoms of living organisms with a protein clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

An examination of the constancy of the rate of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A single determinant dominates the rate of yeast protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The changing face of the molecular evolutionary clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimating divergence dates from molecular sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimation of primate speciation dates using local molecular clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Dating the emergence of pandemic influenza viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 'Spanish' influenza pandemic virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Ancient human genome sequence of an extinct Palaeo-Eskimo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Revising the human mutation rate: implications for understanding human evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The delayed rise of present-day mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Three keys to the radiation of angiosperms into freezing environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Gibbon genome and the fast karyotype evolution of small apes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimating the rate of evolution of the rate of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Inferring speciation times under an episodic molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Dating primate divergences through an integrated analysis of palaeontological and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A distance-based least-square method for dating speciation events

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimating divergence times in large molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular-clock methods for estimating evolutionary rates and timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Immunological Time Scale for Hominid Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Evolutionary explosions and the phylogenetic fuse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

21 January 2018

Dating the tree of life.

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular Evidence for Deep Precambrian Divergences Among Metazoan Phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular evidence for the early colonization of land by fungi and plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Continental breakup and the ordinal diversification of birds and mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A molecular timescale for vertebrate evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Precision of molecular time estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Whole-genome analyses resolve early branches in the tree of life of modern birds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Phylogenomics resolves the timing and pattern of insect evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Performance of a divergence time estimation method under a probabilistic model of rate evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Divergence time and evolutionary rate estimation with multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A general comparison of relaxed molecular clock models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The fossilized birth-death process for coherent calibration of divergence-time estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Bayesian estimation of divergence times from large sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The molecular clock may be an episodic clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular dates for the "cambrian explosion": the influence of prior assumptions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A dirichlet process prior for estimating lineage-specific substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Bayesian random local clocks, or one rate to rule them all

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A new hominid from the Upper Miocene of Chad, Central Africa

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Molecular timescales and the fossil record: a paleontological perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Paleontological evidence to date the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Exploring uncertainty in the calibration of the molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Best practices for justifying fossil calibrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The Fossil Calibration Database-A New Resource for Divergence Dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Using the fossil record to estimate the age of the last common ancestor of extant primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Combining fossil and molecular data to date the diversification of New World Primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Himalayan fossils of the oldest known pantherine establish ancient origin of big cats

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Dating Tips for Divergence-Time Estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A likelihood approach to estimating phylogeny from discrete morphological character data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Sequencing technologies - the next generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

How many species are there on Earth and in the ocean?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Are evolutionary rates really variable?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Evolutionary Rate at the Molecular Level

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

21 January 2018

Non-Darwinian Evolution

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Enzyme Polymorphisms in Man

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Cladistic analysis of continuous modularized traits provides phylogenetic signals in Homo evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Measurably evolving populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Dating phylogenies with sequentially sampled tips

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Characterization of the 1918 influenza virus polymerase genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Charting the host adaptation of influenza viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Timing the ancestor of the HIV-1 pandemic strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Rise and fall of the Beringian steppe bison

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Mid-Pliocene warm-period deposits in the High Arctic yield insight into camel evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A high-coverage genome sequence from an archaic Denisovan individual

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Reconstructing ancient genomes and epigenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

BEAST 2: a software platform for Bayesian evolutionary analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

A hierarchical Bayesian model for calibrating estimates of species divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

treePL: divergence time estimation using penalized likelihood for large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

21 January 2018

10,000 genomes to come

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Amino-Acid Sequence Investigations of Fibrinopeptides from Various Mammals: Evolutionary Implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Evolutionary Divergence and Convergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Fast Dating Using Least-Squares Criteria and Algorithms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2015.8

Estimating the pattern of nucleotide substitution

31 March 2020

1 reference

12 December 2020

A revised dated phylogeny of the arachnid order Opiliones

1 reference

12 December 2020

Maximum-likelihood estimation of evolutionary trees from continuous characters

1 reference

12 December 2020

A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura

1 reference

12 December 2020

Phylogenetic test of the molecular clock and linearized trees

1 reference

12 December 2020

A compound poisson process for relaxing the molecular clock

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG.2015.8

1 reference

PubMed ID

26688196

Dimensions Publication ID

5 September 2017

0 references

1 reference

PubMed ID

26688196