(Q92203175)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

ChEA3: transcription factor enrichment analysis by orthogonal omics integration (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Avi Ma'ayan

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

3

Alexander Lachmann

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

7

Kathleen M Jagodnik

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

author name string

Alexandra B Keenan

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Denis Torre

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Ariel K Leong

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Megan L Wojciechowicz

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Vivian Utti

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Eryk Kropiwnicki

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

publication date

1 July 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

W1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

W212-W224

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

27 April 2020

copyright license

start time

22 May 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Massive mining of publicly available RNA-seq data from human and mouse.

23 February 2021

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BART: a transcription factor prediction tool with query gene sets or epigenomic profiles.

23 February 2021

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23 February 2021

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Transcription factor activities enhance markers of drug sensitivity in cancer.

23 February 2021

1 reference

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JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

23 February 2021

1 reference

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HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

23 February 2021

1 reference

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ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

23 February 2021

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The Encyclopedia of DNA elements (ENCODE): data portal update

23 February 2021

1 reference

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TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions

23 February 2021

1 reference

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Understanding Tissue-Specific Gene Regulation.

23 February 2021

1 reference

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Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

23 February 2021

1 reference

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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

The characteristic direction: a geometrical approach to identify differentially expressed genes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

The functional consequences of variation in transcription factor binding.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

The role of MIZ-1 in MYC-dependent tumorigenesis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

The Genotype-Tissue Expression (GTEx) project

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

DNA-binding specificities of human transcription factors

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

D³: Data-Driven Documents

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Functional and mechanistic diversity of distal transcription enhancers

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

WGCNA: an R package for weighted correlation network analysis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Model-based analysis of ChIP-Seq (MACS)

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Cytoscape: a software environment for integrated models of biomolecular interaction networks

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602523

23 February 2021

Identifiers

DOI

10.1093/NAR/GKZ446

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114921%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

PubMed publication ID

31114921

1 reference