(Q111629802)

English

Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants

scientific article published on 22 January 2021

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scholarly article

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https://api.crossref.org/v1/works/10.1111/jse.12708

Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants (English)

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https://api.crossref.org/v1/works/10.1111/jse.12708

National Natural Science Foundation of China

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author name string

Shan‐Shan Dong

2

affiliation string

Fairy Lake Botanical Garden Shenzhen & Chinese Academy of Sciences Shenzhen 518004 Guangdong China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Ming‐Qiang Wang

3

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Tian‐Qiang Song

4

affiliation string

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences Nanjing University Nanjing 210046 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Guang‐Can Zhou

5

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

College of Agricultural and Biological Engineering (College of Tree Peony) Heze University Heze 274015 Shandong China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Zhen Li

6

affiliation string

Department of Plant Biotechnology and Bioinformatics, VIB‐UGent Center for Plant Systems Biology Ghent University Ghent 9052 Belgium

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https://api.crossref.org/v1/works/10.1111/jse.12708

Yves Van de Peer

7

affiliation string

College of Horticulture Nanjing Agricultural University Nanjing 210093 China

Department of Plant Biotechnology and Bioinformatics, VIB‐UGent Center for Plant Systems Biology Ghent University Ghent 9052 Belgium

Department of Biochemistry, Genetics and Microbiology University of Pretoria Pretoria 0028 South Africa

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https://api.crossref.org/v1/works/10.1111/jse.12708

Zhu‐Qing Shao

8

affiliation string

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences Nanjing University Nanjing 210046 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Min Chen

10

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Yan‐Mei Zhang

11

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Xiao‐Qin Sun

12

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Hong‐Feng Chen

13

affiliation string

South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Yong‐Xia Zhang

14

affiliation string

College of Life Sciences and Oceanography Shenzhen University Shenzhen 518060 Guangdong China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Shou‐Zhou Zhang

15

affiliation string

Fairy Lake Botanical Garden Shenzhen & Chinese Academy of Sciences Shenzhen 518004 Guangdong China

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https://api.crossref.org/v1/works/10.1111/jse.12708

Fei Chen

16

affiliation string

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology Fujian Agriculture and Forestry University Fuzhou 350002 China

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

Liang‐Sheng Zhang

17

affiliation string

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology Fujian Agriculture and Forestry University Fuzhou 350002 China

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

Cymon Cox

18

affiliation string

Centro de Ciências do Mar Universidade do Algarve Faro 8005‐319 Portugal

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https://api.crossref.org/v1/works/10.1111/jse.12708

Qiang Wang

20

affiliation string

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences Nanjing University Nanjing 210046 China

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

Yue‐Yu Hang

21

affiliation string

Center for Plant Diversity and Systematics, Institute of Botany Jiangsu Province and Chinese Academy of Sciences Nanjing 210014 China

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

publication date

22 January 2021

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https://api.crossref.org/v1/works/10.1111/jse.12708

full work available at URL

https://onlinelibrary.wiley.com/doi/pdf/10.1111/jse.12708

Portable Document Format

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Journal of Systematics and Evolution

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https://api.crossref.org/v1/works/10.1111/jse.12708

jse.12708

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https://api.crossref.org/v1/works/10.1111/jse.12708

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

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Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs.

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The Amborella Genome and the Evolution of Flowering Plants

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CodonO: codon usage bias analysis within and across genomes.

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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

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Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution

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Widespread horizontal transfer of mitochondrial genes in flowering plants

1 reference

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Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

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Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

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Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders

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Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

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The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

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How deep is the conflict between molecular and fossil evidence on the age of angiosperms?

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Widespread genome duplications throughout the history of flowering plants

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Horizontal gene transfer in parasitic plants

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An Early Cretaceous fruit with affinities to Ceratophyllaceae

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Sequencing angiosperm plastid genomes made easy: a complete set of universal primers and a case study on the phylogeny of saxifragales

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Another look at the root of the angiosperms reveals a familiar tale

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Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.

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Reconstructing the ancestral angiosperm flower and its initial specializations

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Confidence Limits on Phylogenies: an Approach using the Bootstrap

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Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

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Unraveling the evolutionary history of the liverworts (Marchantiophyta): multiple taxa, genomes and analyses

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Where is the root of the universal tree of life?

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Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

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The meaning of Darwin's 'abominable mystery'.

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Cretaceous angiosperm flowers: Innovation and evolution in plant reproduction

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Diversity in obscurity: fossil flowers and the early history of angiosperms

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Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

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Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

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Evolutionary significance of an unusual chloroplast DNA inversion found in two basal angiosperm lineages.

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Robust Inference of Monocot Deep Phylogeny Using an Expanded Multigene Plastid Data Set

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Plant Mitochondrial Genomes: Dynamics and Mechanisms of Mutation

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The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features

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Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

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Palaeobotanical redux: revisiting the age of the angiosperms

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Impact of gene molecular evolution on phylogenetic reconstruction: a case study in the rosids (Superorder Rosanae, Angiosperms)

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Angiosperm phylogeny based on matK sequence information

1 reference

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

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Horizontal gene transfer in eukaryotic evolution

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The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

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A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity.

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The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

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Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

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The timescale of early land plant evolution.

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Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence

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MOLECULAR EVIDENCE FOR HOMOPLOID RETICULATE EVOLUTION AMONG AUSTRALIAN SPECIES OF GOSSYPIUM.

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Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

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The root of the angiosperms revisited

1 reference

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Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

1 reference

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The water lily genome and the early evolution of flowering plants

1 reference

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Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

1 reference

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1 reference

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Expanded Taxonomic Sampling Coupled with Gene Genealogy Interrogation Provides Unambiguous Resolution for the Evolutionary Root of Angiosperms.

1 reference

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Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

Increased taxon sampling greatly reduces phylogenetic error

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https://api.crossref.org/v1/works/10.1111/jse.12708

Identifiers

10.1111/JSE.12708

1 reference

https://api.crossref.org/v1/works/10.1111/jse.12708

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