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The ubiquitous hammerhead ribozyme
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Europe PubMed Central
PMCID
3334697
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
title
The ubiquitous hammerhead ribozyme
(English)
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stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
main subject
ribozyme
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author
Jonathan Perreault
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
Marcos de la Peña
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4
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Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
author name string
Christian Hammann
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1
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Europe PubMed Central
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3334697
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
Andrej Luptak
series ordinal
2
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Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
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27 January 2020
language of work or name
English
0 references
publication date
27 March 2012
1 reference
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
published in
RNA
1 reference
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
volume
18
1 reference
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
issue
5
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Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
page(s)
871-885
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stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
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Identification of hammerhead ribozymes in all domains of life reveals novel structural variations
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Ubiquitous presence of the hammerhead ribozyme motif along the tree of life
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Intronic hammerhead ribozymes are ultraconserved in the human genome
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A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA
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Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana
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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity
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Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets
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Schistosome satellite DNA encodes active hammerhead ribozymes
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Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
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7 April 2017
In vitro evolution suggests multiple origins for the hammerhead ribozyme
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Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads
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Capturing Hammerhead Ribozyme Structures in Action by Modulating General Base Catalysis
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Autolytic processing of dimeric plant virus satellite RNA
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7 April 2017
A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
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7 April 2017
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
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Tertiary contacts distant from the active site prime a ribozyme for catalysis
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Control of gene expression by a natural metabolite-responsive ribozyme
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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
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Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site
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Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus
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Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites
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7 April 2017
Self-cleaving transcripts of satellite DNA from the newt
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7 April 2017
A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria
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7 April 2017
Nucleotide sequence and structural analysis of two satellite RNAs associated with chicory yellow mottle virus
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7 April 2017
Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes
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27 September 2017
Intron cleavage affects processing of alternatively spliced transcripts.
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27 September 2017
Computational discovery of folded RNA domains in genomes and in vitro selected libraries
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27 September 2017
Enhanced product stability in the hammerhead ribozyme
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PubMed Central
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27 September 2017
Structure and function of regulatory RNA elements: ribozymes that regulate gene expression
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27 September 2017
Three-way RNA junctions with remote tertiary contacts: a recurrent and highly versatile fold
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27 September 2017
Catalytic diversity of extended hammerhead ribozymes
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27 September 2017
Hammerhead redux: does the new structure fit the old biochemical data?
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27 September 2017
Minimal and extended hammerheads utilize a similar dynamic reaction mechanism for catalysis
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27 September 2017
Structure, folding and mechanisms of ribozymes
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27 September 2017
Viroids: petite RNA pathogens with distinguished talents
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27 September 2017
Viroids: the minimal non-coding RNAs with autonomous replication
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27 September 2017
Folding and activity of the hammerhead ribozyme
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27 September 2017
The non-Watson-Crick base pairs and their associated isostericity matrices
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27 September 2017
RNAMotif, an RNA secondary structure definition and search algorithm
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27 September 2017
Attempts to obtain more efficient GAC-cleaving hammerhead ribozymes by in vitro selection
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
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27 September 2017
Distribution of hammerhead and hammerhead-like RNA motifs through the GenBank.
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PubMed Central
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27 September 2017
A novel RNA-binding protein from Triturus carnifex identified by RNA-ligand screening with the newt hammerhead ribozyme
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PubMed Central
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27 September 2017
In vitro and in vivo self-cleavage of a viroid RNA with a mutation in the hammerhead catalytic pocket.
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27 September 2017
Searching for patterns in genomic data
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PubMed Central
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27 September 2017
The newt ribozyme is part of a riboprotein complex
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27 September 2017
Hammerhead ribozymes: importance of stem-loop II for activity
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27 September 2017
Identification of a retroviroid-like element from plants
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27 September 2017
Kinetic characterization of intramolecular and intermolecular hammerhead RNAs with stem II deletions
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27 September 2017
A Replication Cycle for Viroids and Other Small Infectious RNA's
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27 September 2017
Minimal sequence requirements for ribozyme activity.
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27 September 2017
Numbering system for the hammerhead
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PubMed Central
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27 September 2017
A newt ribozyme: a catalytic activity in search of a function
1 reference
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PubMed Central
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27 September 2017
Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori
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30 May 2018
The tolerance to exchanges of the Watson Crick base pair in the hammerhead ribozyme core is determined by surrounding elements
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PubMed Central
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30 May 2018
Cloning and characterization of extended hammerheads from a diverse set of caudate amphibians.
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30 May 2018
Tissue-specific permutations of self-cleaving newt satellite-2 transcripts
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PubMed Central
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30 May 2018
Sequence requirements of the hammerhead RNA self-cleavage reaction
1 reference
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PubMed Central
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19 June 2018
Characterization of hammerhead ribozyme reactions.
1 reference
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PubMed Central
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28 November 2018
Biochemistry. The evolution of ribozyme chemistry
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PubMed Central
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28 November 2018
Idiosyncratic cleavage and ligation activity of individual hammerhead ribozymes and core sequence variants thereof.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
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28 November 2018
A database search for hammerhead ribozyme motifs.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
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28 November 2018
Analysis of the conserved P9-G10.1 metal-binding motif in hammerhead ribozymes with an extra nucleotide inserted between A9 and G10.1 residues
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
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28 November 2018
Fast Cleavage Kinetics of a Natural Hammerhead Ribozyme
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
retrieved
28 November 2018
Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
retrieved
28 November 2018
An extra nucleotide in the consensus catalytic core of a viroid hammerhead ribozyme: implications for the design of more efficient ribozymes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
retrieved
28 November 2018
Novel requirements in peripheral structures of the extended satellite 2 hammerhead.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
retrieved
28 November 2018
Simple RNA enzymes with new and highly specific endoribonuclease activities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334697
retrieved
28 November 2018
The Hammerhead Ribozyme Structure Brought in Line
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22454536
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A small catalytic oligoribonucleotide
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22454536
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1261/RNA.031401.111
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
525613
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
OpenCitations bibliographic resource ID
525613
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
525613
PMCID
3334697
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
525613
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
PubMed ID
22454536
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
525613
stated in
Europe PubMed Central
PMCID
3334697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22454536%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 January 2020
ResearchGate publication ID
221979479
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