(Q27438095)

3

object named as

Christopher J Langmead

0 references

author name string

Arvind Ramanathan

1

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Andrej J Savol

2

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Pratul K Agarwal

4

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Chakra S Chennubhotla

Creative Commons Attribution 4.0 International

5

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language of work or name

English

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publication date

2011

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published in

PLOS One

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volume

6

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issue

1

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page(s)

e15827

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copyright license

start time

28 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Hidden alternative structures of proline isomerase essential for catalysis

1 reference

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Detection of functional modes in protein dynamics

21 March 2017

1 reference

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

21 March 2017

1 reference

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Enzymes: An integrated view of structure, dynamics and function

21 March 2017

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Structural insights into the catalytic mechanism of cyclophilin A

21 March 2017

1 reference

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Network of coupled promoting motions in enzyme catalysis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Scalable molecular dynamics with NAMD

21 March 2017

1 reference

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The Amber biomolecular simulation programs

21 March 2017

1 reference

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Ubiquitin-dependent protein degradation

21 March 2017

1 reference

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Multiple conformational changes in enzyme catalysis

21 March 2017

1 reference

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An Information-Maximization Approach to Blind Separation and Blind Deconvolution

21 March 2017

1 reference

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Dynamic personalities of proteins

21 March 2017

1 reference

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The dynamic energy landscape of dihydrofolate reductase catalysis

7 April 2017

1 reference

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Intrinsic dynamics of an enzyme underlies catalysis

7 April 2017

1 reference

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Essential dynamics of proteins

7 April 2017

1 reference

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The Energy Landscapes and Motions of Proteins

7 April 2017

1 reference

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The tail wagging the dog: insights into catalysis in R67 dihydrofolate reductase

7 April 2017

1 reference

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Systematic determination of order parameters for chain dynamics using diffusion maps.

29 September 2017

1 reference

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Computational identification of slow conformational fluctuations in proteins

29 September 2017

1 reference

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Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides

29 September 2017

1 reference

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The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

29 September 2017

1 reference

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Enzymatic transition states and dynamic motion in barrier crossing

29 September 2017

1 reference

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Functionally important conformations of the Met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations

29 September 2017

1 reference

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Multiscale characterization of protein conformational ensembles

29 September 2017

1 reference

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Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions.

29 September 2017

1 reference

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Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis

29 September 2017

1 reference

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Free-energy landscape of enzyme catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

An NMR perspective on enzyme dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Role of protein dynamics in reaction rate enhancement by enzymes.

29 September 2017

1 reference

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Coarse-grained normal mode analysis in structural biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Protein dynamics and enzymatic catalysis: investigating the peptidyl-prolyl cis-trans isomerization activity of cyclophilin A.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

A perspective on enzyme catalysis.

29 September 2017

1 reference

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Slaving: solvent fluctuations dominate protein dynamics and functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Catalysis of cis/trans isomerization in native HIV-1 capsid by human cyclophilin A

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Enzyme dynamics during catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Observation of unstable species in enzyme-catalyzed transformations using protein crystallography

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Investigating protein dynamics in collective coordinate space

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Conformational substates in proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Anisotropy and anharmonicity of atomic fluctuations in proteins: implications for X-ray analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030567

Cis/trans isomerization in HIV-1 capsid protein catalyzed by cyclophilin A: insights from computational and theoretical studies

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

High-order contrasts for independent component analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

Can principal components yield a dimension reduced description of protein dynamics on long time scales?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

Dihedral angle principal component analysis of molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

The missing term in effective pair potentials

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015827

Energy landscape of a small peptide revealed by dihedral angle principal component analysis

21 January 2018

1 reference

12 December 2020

Molecular dynamics of ferrocytochrome c: Anharmonicity of atomic displacements

1 reference

12 December 2020

Vibrational energy transfer in a protein molecule

1 reference

12 December 2020

Solvation, reorganization energy, and biological catalysis

1 reference

12 December 2020

Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy

1 reference

12 December 2020

Free energy landscape of a biomolecule in dihedral principal component space: sampling convergence and correspondence between structures and minima

1 reference

12 December 2020

Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin

1 reference

12 December 2020

Anisotropy and anharmonicity of atomic fluctuations in proteins: analysis of a molecular dynamics simulation

1 reference

12 December 2020

Molecular dynamics of ferrocytochrome c. Magnitude and anisotropy of atomic displacements

1 reference

12 December 2020

Mathematical analysis of coupled parallel simulations

1 reference

12 December 2020

1 reference

12 December 2020

Molecular dynamics simulations of native and substrate-bound lysozyme. A study of the average structures and atomic fluctuations

1 reference

12 December 2020

The signaling pathway of rhodopsin

1 reference

12 December 2020

Conformation of T4 lysozyme in solution. Hinge-bending motion and the substrate-induced conformational transition studied by site-directed spin labeling

1 reference

12 December 2020

Full correlation analysis of conformational protein dynamics

1 reference

12 December 2020