(Q28595711)

Rod A Wing

Beatriz Elena Padilla Hurtado

36

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Beatriz Elena Padilla Hurtado

34

0 references

Wen Yao

Wen Yao

5

0 references

Dao-Xiu Zhou

Dao-Xiu Zhou

27

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Qifa Zhang

37

Qifa Zhang

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author name string

Ling-Ling Chen

2

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Feng Xing

3

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David A Kudrna

4

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Dario Copetti

6

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Ting Mu

7

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Weiming Li

8

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Jia-Ming Song

9

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Weibo Xie

10

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Seunghee Lee

11

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Jayson Talag

12

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Lin Shao

13

0 references

Yue An

14

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Chun-Liu Zhang

15

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Yidan Ouyang

16

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Shuai Sun

17

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Wen-Biao Jiao

18

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Fang Lv

19

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Bogu Du

20

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Meizhong Luo

21

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Carlos Ernesto Maldonado

22

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Jose Luis Goicoechea

23

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Lizhong Xiong

24

0 references

Changyin Wu

25

0 references

Yongzhong Xing

26

0 references

Sibin Yu

28

0 references

Yu Zhao

29

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Gongwei Wang

30

0 references

Yeisoo Yu

31

0 references

Yijie Luo

32

0 references

Zhi-Wei Zhou

33

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Ann Danowitz

Proceedings of the National Academy of Sciences of the United States of America

35

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language of work or name

English

0 references

publication date

30 August 2016

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published in

0 references

volume

113

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issue

35

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page(s)

E5163-71

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cites work

The InterPro protein families database: the classification resource after 15 years

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

miRBase: annotating high confidence microRNAs using deep sequencing data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Heterosis in elite hybrid rice: speculation on the genetic and biochemical mechanisms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

The Pfam protein families database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

HMMER web server: interactive sequence similarity searching

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Rfam: Wikipedia, clans and the "decimal" release

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Assessing the gene space in draft genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Query-dependent banding (QDB) for faster RNA similarity searches

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Automated generation of heuristics for biological sequence comparison

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Gene finding in novel genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

BLAT—The BLAST-Like Alignment Tool

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

KEGG: kyoto encyclopedia of genes and genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

17 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

17 March 2017

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

InterProScan--an integration platform for the signature-recognition methods in InterPro

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

The map-based sequence of the rice genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Fast algorithms for large-scale genome alignment and comparison

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Repbase Update, a database of repetitive elements in eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Differential expression of GS5 regulates grain size in rice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

P-MITE: a database for plant miniature inverted-repeat transposable elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Understanding reproductive isolation based on the rice model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

A gene ontology inferred from molecular networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genetic composition of yield heterosis in an elite rice hybrid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

The UniProt-GO Annotation database in 2011.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Sequence-based physical mapping of complex genomes by whole genome profiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

RICD: a rice indica cDNA database resource for rice functional genomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

PlantDB - a versatile database for managing plant research

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Automatic annotation of eukaryotic genes, pseudogenes and promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Identifying repeat domains in large genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5024649

Genome-wide association studies of 14 agronomic traits in rice landraces.

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

genBlastG: using BLAST searches to build homologous gene models

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

Automatic discovery of cell types and microcircuitry from neural connectomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1611012113

Ancestral genome duplication in rice

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27535938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27535938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1611012113

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3551460

OpenCitations bibliographic resource ID

3551460

1 reference