(Q28607426)

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data

Crossref

volume

6

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page(s)

329

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cites work

1 reference

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Metagenomic microbial community profiling using unique clade-specific marker genes

17 March 2017

1 reference

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Rfam: Wikipedia, clans and the "decimal" release

17 March 2017

1 reference

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

17 March 2017

1 reference

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

17 March 2017

1 reference

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Infernal 1.0: inference of RNA alignments

17 March 2017

1 reference

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

17 March 2017

1 reference

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

17 March 2017

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Accelerated Profile HMM Searches

7 April 2017

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

7 April 2017

1 reference

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 April 2017

1 reference

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

7 April 2017

1 reference

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Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.

7 April 2017

1 reference

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Ribosomal Database Project: data and tools for high throughput rRNA analysis

29 September 2017

1 reference

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Whole-genome sequencing in bacteriology: state of the art.

29 September 2017

1 reference

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Microbial community analysis using MEGAN.

29 September 2017

1 reference

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Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

29 September 2017

1 reference

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Species-level analysis of DNA sequence data from the NIH Human Microbiome Project

29 September 2017

1 reference

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rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

29 September 2017

1 reference

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Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

29 September 2017

1 reference

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MetaSim: a sequencing simulator for genomics and metagenomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

Metagenomics: genomic analysis of microbial communities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4646959

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2015.00329

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2015.00329