(Q28657358)

5

Michael Melkonian

0 references

Anders Larsson

Anders Larsson

13

0 references

Markus Ruhsam

Markus Ruhsam

7

0 references

Joshua P. Der

Joshua P Der

9

0 references

Fay-Wei Li

Fay-Wei Li

1

0 references

Steven Kelly

Steven Kelly

3

0 references

Jun Wang

Jun Wang

24

0 references

Lisa Pokorny

Lisa Pokorny

Juan Carlos Villarreal Aguilar

12

0 references

2

Barbara J. Crandall-Stotler

Juan Carlos Villarreal

0 references

26

Barbara J Crandall-Stotler

0 references

Douglas E. Soltis

29

Douglas E Soltis

0 references

Jane Langdale

32

Jane A Langdale

0 references

Sean W. Graham

1 reference

ORCID Public Data File 2021

Carl J. Rothfels

4

Carl J Rothfels

0 references

Michael Deyholos

28

Michael K Deyholos

0 references

Dennis William Stevenson

25

Dennis W Stevenson

0 references

Sean P. Graham

30

Sean W Graham

0 references

Sarah Mathews

34

Sarah Mathews

0 references

Eric J Carpenter

17

Eric Carpenter

0 references

Kathleen M Pryer

35

Kathleen M Pryer

0 references

Erin M Sigel

8

Erin M Sigel

0 references

Dylan Burge

11

Dylan O Burge

0 references

Jarmila Pittermann

10

Jarmila Pittermann

0 references

Eftychios Frangedakis

Eftychios Frangedakis

6

0 references

Jonathan Shaw

27

A Jonathan Shaw

0 references

author name string

Tao Chen

14

0 references

Stina Weststrand

15

0 references

Philip Thomas

16

0 references

Yong Zhang

18

0 references

Zhijian Tian

19

0 references

Li Chen

20

0 references

Zhixiang Yan

21

0 references

Ying Zhu

22

0 references

Xiao Sun

23

0 references

Michael D Windham

Proceedings of the National Academy of Sciences of the United States of America

31

0 references

language of work or name

English

0 references

publication date

6 May 2014

0 references

published in

0 references

volume

111

0 references

issue

18

0 references

page(s)

6672-7

0 references

cites work

Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Massive mitochondrial gene transfer in a parasitic flowering plant clade

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Horizontal transfer of expressed genes in a parasitic flowering plant

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Fast gapped-read alignment with Bowtie 2

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Establishing a time-scale for plant evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Dynamic evolution of base composition: causes and consequences in avian phylogenomics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

CDD: a Conserved Domain Database for the functional annotation of proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Horizontal gene transfer by the parasitic plant Striga hermonthica

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants.

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

BLAST+: architecture and applications

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

The deepest divergences in land plants inferred from phylogenomic evidence

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Dinosaur coprolites and the early evolution of grasses and grazers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Gene transfer from a parasitic flowering plant to a fern

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

ProtTest: selection of best-fit models of protein evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Likelihood-based tests of topologies in phylogenetics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

CAP3: A DNA sequence assembly program

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A codon-based model of nucleotide substitution for protein-coding DNA sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Genetic applications of an inverse polymerase chain reaction

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

HyPhy: hypothesis testing using phylogenies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

The Amborella Genome and the Evolution of Flowering Plants

23 March 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.1319929111

Morphologically complex plant macrofossils from the Late Silurian of Arctic Canada

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Search and clustering orders of magnitude faster than BLAST

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

7 April 2017

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Phytozome: a comparative platform for green plant genomics

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Transcriptome-mining for single-copy nuclear markers in ferns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Horizontal gene transfer in eukaryotes: the weak-link model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

The embedding problem for markov models of nucleotide substitution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Real-time evolution of new genes by innovation, amplification, and divergence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A phytochrome-phototropin light signaling complex at the plasma membrane

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Adaptive evolution of C(4) photosynthesis through recurrent lateral gene transfer.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A random effects branch-site model for detecting episodic diversifying selection.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Structure and function of plant photoreceptors.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Widespread positive selection in the photosynthetic Rubisco enzyme

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A single chromoprotein with triple chromophores acts as both a phytochrome and a phototropin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Ferns diversified in the shadow of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Responses of ferns to red light are mediated by an unconventional photoreceptor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Explosive invasion of plant mitochondria by a group I intron

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

Cloning and Sequence Analysis of Red/Blue Light Chimeric Photoreceptor Genes from Three Fern Species (Coniogramme intermedia var. glabra, Plagiogyria distinctissima and Pronephrium lakhimpurnense)

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Fern Phylogeny Inferred from 400 Leptosporangiate Species and Three Plastid Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Compensatory gene amplification restores fitness after inter-species gene replacements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Widespread horizontal transfer of mitochondrial genes in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Shrimp Pm-fortilin inhibits the expression of early and late genes of white spot syndrome virus (WSSV) in an insect cell model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Efficient likelihood computations with nonreversible models of evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Oldest known mosses discovered in Mississippian (late Visean) strata of Germany

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1319929111

Accommodating the effect of ancient DNA damage on inferences of demographic histories

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020063

27 November 2018

Identifiers

DOI

10.1073/PNAS.1319929111

1 reference

ADS bibcode

2014PNAS..111.6672L

0 references

1 reference

1 reference

PubMed publication ID

24733898

1 reference