(Q30164860)

18 September 2017

Folding of a highly conserved diverging turn motif from the SH3 domain (English)

1 reference

18 September 2017

0 references

2

Angel E Garcia

1 reference

18 September 2017

S Gnanakaran

1

1 reference

PMCID

1302727

18 September 2017

language of work or name

English

0 references

publication date

1 March 2003

1 reference

18 September 2017

1 reference

18 September 2017

84

1 reference

18 September 2017

3

1 reference

18 September 2017

1548-1562

1 reference

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

An information theory model of hydrophobic interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Molecular dynamics simulations of a highly charged peptide from an SH3 domain: possible sequence-function relationship

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Calculation of ensembles of structures representing the unfolded state of an SH3 domain.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Dramatic stabilization of an SH3 domain by a single substitution: roles of the folded and unfolded states.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

The identification of conserved interactions within the SH3 domain by alignment of sequences and structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Fast kinetics and mechanisms in protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Exploring local and non-local interactions for protein stability by structural motif engineering.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Experiment and theory highlight role of native state topology in SH3 folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Thermodynamic analysis of biomolecular interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Understanding beta-hairpin formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Study of the stability and unfolding mechanism of BBA1 by molecular dynamics simulations at different temperatures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Mutagenesis of a buried polar interaction in an SH3 domain: sequence conservation provides the best prediction of stability effects.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Prediction and structural characterization of an independently folding substructure in the src SH3 domain.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Prediction of local structure in proteins using a library of sequence-structure motifs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Heat capacities of amino acids, peptides and proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Folding funnels and frustration in off-lattice minimalist protein landscapes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Blind predictions of local protein structure in CASP2 targets using the I-sites library

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Folding dynamics and mechanism of beta-hairpin formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Theory of protein folding: the energy landscape perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Contacting the protein folding funnel with NMR.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Local versus nonlocal interactions in protein folding and stability--an experimentalist's point of view

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Protein folding for realists: a timeless phenomenon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Conformational analysis of peptides corresponding to beta-hairpins and a beta-sheet that represent the entire sequence of the alpha-spectrin SH3 domain.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Energetics of protein structure.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Effect of a single aspartate on helix stability at different positions in a neutral alanine-based peptide

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Funnels, pathways, and the energy landscape of protein folding: a synthesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: A ubiquitous properly of water

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Analysis and prediction of the different types of beta-turn in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. II. Plastocyanin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. I. Myohemerythrin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Local interactions in bends of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Conformational Diffusion and Helix Formation Kinetics

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Origin of Entropy Convergence in Hydrophobic Hydration and Protein Folding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Beta-turn propensities as paradigms for the analysis of structural motifs to engineer protein stability

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302727

Molecular dynamics with coupling to an external bath

26 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Assessing the effect of conformational averaging on the measured values of observables

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

The effect of motional averaging on the calculation of NMR-derived structural properties

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

inferred from DOI database lookup

7 January 2021

based on heuristic

Folding of peptide fragments comprising the complete sequence of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Exploring the energy landscape of a beta hairpin in explicit solvent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Conformational interconversions in peptide beta-turns: analysis of turns in proteins and computational estimates of barriers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Helix stop signals in proteins and peptides: the capping box

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Hydrophobic Effects on a Molecular Scale

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Computer simulation of aqueous Na-Cl electrolytes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Replica-exchange molecular dynamics method for protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Reverse turns in blocked dipeptides are intrinsically unstable in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

The equilibrium folding pathway of staphylococcal nuclease: identification of the most stable chain-chain interactions by NMR and CD spectroscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Residual helical and turn structure in the denatured state of staphylococcal nuclease: analysis of peptide fragments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974966-2

10.1016/S0006-3495(03)74966-2

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

18 September 2017

1 reference

PMCID

1302727