(Q30430527)

21 June 2017

title

Influence of protein structure databases on the predictive power of statistical pair potentials (English)

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21 June 2017

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E Furuichi

1

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21 June 2017

P Koehl

series ordinal

2

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21 June 2017

language of work or name

English

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publication date

1 May 1998

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21 June 2017

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21 June 2017

volume

31

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21 June 2017

issue

2

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21 June 2017

page(s)

139-149

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Principles of protein folding--a perspective from simple exact models.

21 June 2017

cites work

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Structure-derived potentials and protein simulations

21 January 2018

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Potential energy functions for threading

21 January 2018

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Mean-field minimization methods for biological macromolecules

21 January 2018

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Novel methods of sampling phase space in the simulation of biological systems

21 January 2018

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Potential energy functions

21 January 2018

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Knowledge-based potentials for proteins

21 January 2018

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Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation

21 January 2018

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Contact potential that recognizes the correct folding of globular proteins

21 January 2018

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Optimal protein-folding codes from spin-glass theory

21 January 2018

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Conformation, energy, and folding ability of selected amino acid sequences

21 January 2018

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Self-consistently optimized statistical mechanical energy functions for sequence structure alignment

21 January 2018

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An iterative method for extracting energy-like quantities from protein structures.

21 January 2018

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Easily searched protein folding potentials.

21 January 2018

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How to derive a protein folding potential? A new approach to an old problem

21 January 2018

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 January 2018

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Protein tertiary structure recognition using optimized Hamiltonians with local interactions

21 January 2018

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A new approach to protein fold recognition

21 January 2018

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Atomic environment energies in proteins defined from statistics of accessible and contact surface areas

21 January 2018

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Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures

21 January 2018

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Pseudodihedrals: simplified protein backbone representation with knowledge-based energy

21 January 2018

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Energy functions that discriminate X-ray and near native folds from well-constructed decoys

21 January 2018

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Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

21 January 2018

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Recognition of errors in three-dimensional structures of proteins

21 January 2018

1 reference

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Lattice neural network minimization. Application of neural network optimization for locating the global-minimum conformations of proteins.

21 January 2018

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A new approach to the design of stable proteins

21 January 2018

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Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

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Are database-derived potentials valid for scoring both forward and inverted protein folding?

21 January 2018

1 reference

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Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

21 January 2018

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The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

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Recurring structural motifs in proteins with different functions

21 January 2018

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Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

21 January 2018

1 reference

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Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

21 January 2018

1 reference

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Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

21 January 2018

1 reference

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Helmholtz free energies of atom pair interactions in proteins

21 January 2018

1 reference

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The frequency of ion-pair substructures in proteins is quantitatively related to electrostatic potential: a statistical model for nonbonded interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819980501%2931%3A2%3C139%3A%3AAID-PROT4%3E3.0.CO%3B2-H

Helmholtz free energy of peptide hydrogen bonds in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819980501%2931%3A2%3C139%3A%3AAID-PROT4%3E3.0.CO%3B2-H

10.1002/(SICI)1097-0134(19980501)31:2<139::AID-PROT4>3.0.CO;2-H

21 January 2018

Identifiers

DOI

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21 June 2017

1 reference