(Q30875027)

19 October 2017

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data (English)

1 reference

alternative mRNA splicing, via spliceosome

19 October 2017

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data (undetermined language)

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main subject

RNA sequencing

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1 reference

1 reference

Zhi-xiang Lu

3

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Michael D. Henry

object named as

Michael D Henry

5

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author name string

Shihao Shen

1

1 reference

19 October 2017

Juw Won Park

2

1 reference

19 October 2017

Lan Lin

4

1 reference

19 October 2017

Ying Nian Wu

6

1 reference

19 October 2017

Qing Zhou

7

1 reference

19 October 2017

Yi Xing

8

1 reference

19 October 2017

Michael D. Henry

5

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language of work or name

English

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publication date

5 December 2014

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full work available at URL

19 October 2017

23 December 2014

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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280593/

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published in

Proceedings of the National Academy of Sciences of the United States of America

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19 October 2017

111

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19 October 2017

51

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19 October 2017

E5593-601

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Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization

19 October 2017

E5593-E5601

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Power analysis and sample size estimation for RNA-Seq differential expression

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Methods to study splicing from high-throughput RNA sequencing data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

RNA-seq differential expression studies: more sequence or more replication?

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Comprehensive molecular characterization of clear cell renal cell carcinoma

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Tumor-specific isoform switch of the fibroblast growth factor receptor 2 underlies the mesenchymal and malignant phenotypes of clear cell renal cell carcinomas

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Differential analysis of gene regulation at transcript resolution with RNA-seq

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Detecting differential usage of exons from RNA-seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Functional consequences of developmentally regulated alternative splicing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

SpliceTrap: a method to quantify alternative splicing under single cellular conditions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Sequencing technology does not eliminate biological variability

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Design and validation issues in RNA-seq experiments

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Improving RNA-Seq expression estimates by correcting for fragment bias

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Detection and removal of biases in the analysis of next-generation sequencing reads

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Analysis and design of RNA sequencing experiments for identifying isoform regulation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Alternative expression analysis by RNA sequencing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Modeling non-uniformity in short-read rates in RNA-Seq data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Statistical design and analysis of RNA sequencing data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Biases in Illumina transcriptome sequencing caused by random hexamer priming

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Alternative splicing and evolution: diversification, exon definition and function

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Regulation of alternative splicing by histone modifications

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Expansion of the eukaryotic proteome by alternative splicing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

TopHat: discovering splice junctions with RNA-Seq

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

ZEB1 enhances transendothelial migration and represses the epithelial phenotype of prostate cancer cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

RNA-Seq: a revolutionary tool for transcriptomics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Alternative isoform regulation in human tissue transcriptomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

Splicing in disease: disruption of the splicing code and the decoding machinery

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4280593

22 May 2018

Identifiers

DOI

10.1073/PNAS.1419161111

1 reference

release_yzqca5eslrapjjrh7b2suqqtge

19 October 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/yzqca5eslrapjjrh7b2suqqtge

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

19 October 2017

PubMed publication ID

25480548

1 reference