(Q30911195)

27 June 2017

Navigating through metaproteomics data: a logbook of database searching (English)

1 reference

27 June 2017

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Jarkko Salojärvi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Salla Keskitalo

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Markku Varjosalo

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Erdmann Rapp

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

9

Willem M de Vos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Carolin A Kolmeder

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Froukje J Verdam

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Sander S Rensen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Udo Reichl

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Lennart Martens

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

publication date

16 March 2015

1 reference

27 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

20

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

3439-3453

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25778831%20AND%20SRC:MED&resulttype=core&format=json

Current methods for global proteome identification

6 June 2020

cites work

1 reference

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Algorithms for the de novo sequencing of peptides from tandem mass spectra

21 January 2018

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A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

21 January 2018

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Data maximization by multipass analysis of protein mass spectra

21 January 2018

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Analysis of the resolution limitations of peptide identification algorithms.

21 January 2018

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Learning from decoys to improve the sensitivity and specificity of proteomics database search results

21 January 2018

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Searching for a needle in a stack of needles: challenges in metaproteomics data analysis

21 January 2018

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Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

21 January 2018

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Metaproteomics of our microbiome - developing insight in function and activity in man and model systems

21 January 2018

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Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture

21 January 2018

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A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

21 January 2018

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Metaproteomics: Evaluation of protein extraction from activated sludge

21 January 2018

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High-throughput parallel proteogenomics: a bacterial case study

21 January 2018

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Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework

21 January 2018

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An iterative workflow for mining the human intestinal metaproteome

21 January 2018

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Beyond gene expression: the impact of protein post-translational modifications in bacteria.

21 January 2018

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Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies.

21 January 2018

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Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

21 January 2018

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Combining results of multiple search engines in proteomics

21 January 2018

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

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Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies

21 January 2018

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Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

21 January 2018

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A metaproteomic pipeline to identify newborn mouse gut phylotypes

21 January 2018

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Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica.

21 January 2018

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Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

21 January 2018

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A complex standard for protein identification, designed by evolution.

21 January 2018

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Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry

21 January 2018

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Human intestinal microbiota composition is associated with local and systemic inflammation in obesity

21 January 2018

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In-gel digestion for mass spectrometric characterization of proteins and proteomes

21 January 2018

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The unique features of glycolytic pathways in Archaea.

21 January 2018

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Discovering novel biology by in silico archaeology

21 January 2018

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TANDEM: matching proteins with tandem mass spectra

21 January 2018

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Open mass spectrometry search algorithm

21 January 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

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Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

21 January 2018

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Improved results in proteomics by use of local and peptide-class specific false discovery rates

21 January 2018

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Interpretation of shotgun proteomic data: the protein inference problem

21 January 2018

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Proteomics data validation: why all must provide data

21 January 2018

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DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

21 January 2018

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PepNovo: de novo peptide sequencing via probabilistic network modeling

21 January 2018

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Metaproteogenomic analysis of a community of sponge symbionts

21 January 2018

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High-fat diet alters gut microbiota physiology in mice

21 January 2018

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Optimizing search conditions for the mass fingerprint-based identification of proteins

21 January 2018

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Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

21 January 2018

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Host-centric proteomics of stool: a novel strategy focused on intestinal responses to the gut microbiota.

21 January 2018

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The problem with peptide presumption and the downfall of target-decoy false discovery rates

21 January 2018

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Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics

21 January 2018

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Target-decoy approach and false discovery rate: when things may go wrong

21 January 2018

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When target-decoy false discovery rate estimations are inaccurate and how to spot instances

21 January 2018

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Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching

21 January 2018

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PepExplorer: a similarity-driven tool for analyzing de novo sequencing results

21 January 2018

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Development and validation of a spectral library searching method for peptide identification from MS/MS.

21 January 2018

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Building consensus spectral libraries for peptide identification in proteomics

21 January 2018

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Metaproteomics of soils from semiarid environment: functional and phylogenetic information obtained with different protein extraction methods.

21 January 2018

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Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project

21 January 2018

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Peptide identification quality control

21 January 2018

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Quality assessments of peptide-spectrum matches in shotgun proteomics

21 January 2018

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