(Q31028719)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

A review of methods for interpretation of glycopeptide tandem mass spectral data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Joseph Zaia

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Han Hu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Joshua Klein

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Nancy Leymarie

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

publication date

26 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

published in

Glycoconjugate Journal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

285-296

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1007/s10719-015-9633-3

1 March 2020

exact match

0 references

cites work

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21 June 2018

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MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra

21 June 2018

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Novel LC-MS² product dependent parallel data acquisition function and data analysis workflow for sequencing and identification of intact glycopeptides

21 June 2018

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UniCarbKB: building a knowledge platform for glycoproteomics

21 June 2018

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 June 2018

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Concurrent automated sequencing of the glycan and peptide portions of O-linked glycopeptide anions by ultraviolet photodissociation mass spectrometry.

21 June 2018

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Comparative glycomics analysis of influenza Hemagglutinin (H5N1) produced in vaccine relevant cell platforms.

21 June 2018

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UniNovo: a universal tool for de novo peptide sequencing

21 June 2018

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Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures.

21 June 2018

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GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectra

21 June 2018

1 reference

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SweetSEQer, simple de novo filtering and annotation of glycoconjugate mass spectra

21 June 2018

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A classifier based on accurate mass measurements to aid large scale, unbiased glycoproteomics

21 June 2018

1 reference

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Characterization of host-cell line specific glycosylation profiles of early transmitted/founder HIV-1 gp120 envelope proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Electron transfer dissociation (ETD): the mass spectrometric breakthrough essential for O-GlcNAc protein site assignments-a study of the O-GlcNAcylated protein host cell factor C1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

A proteomics search algorithm specifically designed for high-resolution tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Software for automated interpretation of mass spectrometry data from glycans and glycopeptides

21 June 2018

1 reference

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Byonic: advanced peptide and protein identification software

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Glycobioinformatics: current strategies and tools for data mining in MS-based glycoproteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Comet: an open-source MS/MS sequence database search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Automated glycopeptide analysis--review of current state and future directions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

GlycoPep grader: a web-based utility for assigning the composition of N-linked glycopeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Use of CID/ETD mass spectrometry to analyze glycopeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Effective use of mass spectrometry for glycan and glycopeptide structural analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Semi-automated identification of N-Glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Mutagenesis of surfactant protein D informed by evolution and x-ray crystallography enhances defenses against influenza A virus in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Target-decoy approach and false discovery rate: when things may go wrong

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

UniCarbKB: putting the pieces together for glycomics research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Mass spectrometric glycan rearrangements

21 June 2018

1 reference

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An unbiased approach for analysis of protein glycosylation and application to influenza vaccine hemagglutinin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

UniCarb-DB: a database resource for glycomic discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Andromeda: a peptide search engine integrated into the MaxQuant environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Mass spectrometry based glycoproteomics--from a proteomics perspective

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Decoding signalling networks by mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

OpenMS and TOPP: open source software for LC-MS data analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Target-decoy search strategy for mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Bioinformatics in glycomics: glycan characterization with mass spectrometric data using SimGlycan

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Glycome-DB.org: a portal for querying across the digital world of carbohydrate sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

The Universal Protein Resource (UniProt) 2009

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

ProteoWizard: open source software for rapid proteomics tools development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

N-glycoproteomics - an automated workflow approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

"Glyco-peakfinder"--de novo composition analysis of glycoconjugates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

N-Glycan structure annotation of glycopeptides using a linearized glycan structure database (GlyDB)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Protein glycosylation analysis by liquid chromatography-mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Combining lectin microcolumns with high-resolution separation techniques for enrichment of glycoproteins and glycopeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

PepNovo: de novo peptide sequencing via probabilistic network modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Open mass spectrometry search algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

TANDEM: matching proteins with tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Selective identification and differentiation of N- and O-linked oligosaccharides in glycoproteins by liquid chromatography-mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

Computer program (SEQPEP) to aid in the interpretation of high-energy collision tandem mass spectra of peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882288

APPLICATION OF MASS SPECTROMETRY TO STRUCTURE PROBLEMS. I. AMINO ACID SEQUENCE IN PEPTIDES

21 June 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Protein identification using a quadrupole ion trap mass spectrometer and SEQUEST database matching

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Detailed characterization of carbohydrate linkage and sequence in an ion trap mass spectrometer: glycosphingolipids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Electron capture dissociation and infrared multiphoton dissociation MS/MS of an N-glycosylated tryptic peptic to yield complementary sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Higher energy collision dissociation (HCD) product ion-triggered electron transfer dissociation (ETD) mass spectrometry for the analysis of N-linked glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Combination of abundant protein depletion and multi-lectin affinity chromatography (M-LAC) for plasma protein biomarker discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

A direct approach to false discovery rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

GlycoMiner: a new software tool to elucidate glycopeptide composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Sweet Substitute: a software tool for in silico fragmentation of peptide-linked N-glycans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Automated N-glycopeptide identification using a combination of single- and tandem-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

De novo glycan structure search with the CID MS/MS spectra of native N-glycopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Computational framework for identification of intact glycopeptides in complex samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Sweet-Heart - an integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10719-015-9633-3

Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins

21 January 2018

1 reference

12 December 2020

Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: methods for selective detection of glycopeptides in protein digests

1 reference

12 December 2020

GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry

1 reference

12 December 2020

GlycoPep DB: a tool for glycopeptide analysis using a "Smart Search"

1 reference

12 December 2020

Structural characterization of carbohydrate sequence, linkage, and branching in a quadrupole Ion trap mass spectrometer: neutral oligosaccharides and N-linked glycans

1 reference

12 December 2020

10.1007/S10719-015-9633-3

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26612686%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference