(Q33289001)

25 July 2017

title

High-throughput identification of interacting protein-protein binding sites (English)

1 reference

25 July 2017

3

Philip E Bourne

0 references

author name string

Jo-Lan Chung

series ordinal

1

1 reference

25 July 2017

Wei Wang

series ordinal

2

1 reference

25 July 2017

publication date

27 June 2007

1 reference

25 July 2017

1 reference

25 July 2017

volume

8

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25 July 2017

page(s)

223

1 reference

Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different

25 July 2017

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1 reference

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Analysing six types of protein-protein interfaces

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Comparative assessment of large-scale data sets of protein-protein interactions

21 June 2018

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Interrogating protein interaction networks through structural biology

21 June 2018

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21 June 2018

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Evolutionary predictions of binding surfaces and interactions.

21 June 2018

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Functional organization of the yeast proteome by systematic analysis of protein complexes

21 June 2018

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21 June 2018

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Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase

21 June 2018

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Structure of dihydroorotate dehydrogenase B: electron transfer between two flavin groups bridged by an iron-sulphur cluster

21 June 2018

1 reference

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Co-evolution of proteins with their interaction partners

21 June 2018

1 reference

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Crystal structure of a gamma-herpesvirus cyclin-cdk complex

21 June 2018

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21 June 2018

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Protein interaction maps for complete genomes based on gene fusion events

21 June 2018

1 reference

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Detecting protein function and protein-protein interactions from genome sequences

21 June 2018

1 reference

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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

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Conservation of gene order: a fingerprint of proteins that physically interact

21 June 2018

1 reference

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Anatomy of hot spots in protein interfaces

21 June 2018

1 reference

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21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

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Crystal structure of mouse CD1: An MHC-like fold with a large hydrophobic binding groove

21 June 2018

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Conserved clusters of functionally related genes in two bacterial genomes.

21 June 2018

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An evolutionary trace method defines binding surfaces common to protein families

21 June 2018

1 reference

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Conservation and prediction of solvent accessibility in protein families

21 June 2018

1 reference

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Protein-protein interactions: a review of protein dimer structures

21 June 2018

1 reference

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A simple method for displaying the hydropathic character of a protein

21 June 2018

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

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A novel genetic system to detect protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Phage antibodies: filamentous phage displaying antibody variable domains

21 June 2018

1 reference

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Insights into protein-protein interfaces using a Bayesian network prediction method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Exploiting sequence and structure homologs to identify protein-protein binding sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Statistical analysis and prediction of protein-protein interfaces

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Improved prediction of protein-protein binding sites using a support vector machines approach

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

A two-stage classifier for identification of protein-protein interface residues

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Prediction of protein-protein interaction sites using support vector machines

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Structure-based assembly of protein complexes in yeast

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Predicted protein-protein interaction sites from local sequence information.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

In silico two-hybrid system for the selection of physically interacting protein pairs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Prediction of protein interaction sites from sequence profile and residue neighbor list

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Residue frequencies and pairing preferences at protein-protein interfaces.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

A fast method to predict protein interaction sites from sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Prediction of protein-protein interaction sites using patch analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

Statistical analysis of predominantly transient protein-protein interfaces

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1925121

The Relationship Between Sequence and Interaction Divergence in Proteins

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17594507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein-protein interfaces are special

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17594507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17594507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-223

1 reference

25 July 2017

DBLP publication ID

journals/bmcbi/ChungWB07

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference