(Q33722829)

28 July 2017

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (English)

1 reference

28 July 2017

0 references

1 reference

Secreted endo-1,4-xylanase

5 February 2019

1 reference

5 February 2019

1 reference

Putative pectin acetylesterase

5 February 2019

1 reference

5 February 2019

1 reference

Serine-type carboxypeptidase Y family secreted neutral protease

5 February 2019

1 reference

Putative acid aspartic protease, constitutively expressed

5 February 2019

1 reference

5 February 2019

1 reference

Putative exopolygalacturonase/exoxylogalacturonan hydrolase

5 February 2019

1 reference

5 February 2019

1 reference

Vacuolar aminopeptidase Y family secreted protease

5 February 2019

1 reference

Carboxypeptidase Y family secreted protease

5 February 2019

1 reference

5 February 2019

1 reference

Putative exopolygalacturonase B

5 February 2019

1 reference

5 February 2019

1 reference

Extracellular alpha-glucosidase pro-protein

5 February 2019

1 reference

6 February 2019

1 reference

Putative arabinofuranosidase

6 February 2019

1 reference

Secreted lysosomal Pro-Xaa carboxypeptidase

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

Putative exopolygalacturonase A

6 February 2019

1 reference

Pepsin family secreted acid protease

6 February 2019

1 reference

6 February 2019

1 reference

Putative exopolygalacturonase X

6 February 2019

1 reference

6 February 2019

1 reference

Carboxypeptidase Y family secreted protease

6 February 2019

1 reference

6 February 2019

1 reference

Pectin lyase A, involved in degradation of pectins

6 February 2019

1 reference

Aspergillopepsin A, a pepsin family secreted acid protease

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

Pectate lyase involved in degradation of pectin

6 February 2019

0 references

Putative exopolygalacturonase

0 references

1 reference

1 reference

1 reference

Elena Martens-Uzunova

object named as

Elena S Martens-Uzunova

2

0 references

Peter J. Schaap

object named as

Peter J Schaap

4

0 references

author name string

Machtelt Braaksma

1

1 reference

28 July 2017

Peter J Punt

3

1 reference

28 July 2017

language of work or name

English

0 references

publication date

19 October 2010

1 reference

28 July 2017

1 reference

28 July 2017

11

1 reference

28 July 2017

584

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-584

28 July 2017

0 references

cites work

The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The Proteomics Identifications database: 2010 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

PredGPI: a GPI-anchor predictor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Aspergillus niger genomics: past, present and into the future

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genome sequencing and analysis of Aspergillus oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Open mass spectrometry search algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Improved prediction of signal peptides: SignalP 3.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Feature-based prediction of non-classical and leaderless protein secretion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A combined transmembrane topology and signal peptide prediction method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Glycosylphosphatidylinositol-anchored glucanosyltransferases play an active role in the biosynthesis of the fungal cell wall

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The effect of environmental conditions on extracellular protease activity in controlled fermentations of Aspergillus niger

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Analysis of variance components reveals the contribution of sample processing to transcript variation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

An evolutionary conserved d-galacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Spectral index for assessment of differential protein expression in shotgun proteomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Isolation of four pepsin-like protease genes from Aspergillus niger and analysis of the effect of disruptions on heterologous laccase expression

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Extracellular prolyl endoprotease from Aspergillus niger and its use in the debittering of protein hydrolysates

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The Hera database and its use in the characterization of endoplasmic reticulum proteins.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A novel oxidized low-density lipoprotein-binding protein, Asp-hemolysin, recognizes lysophosphatidylcholine

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A profile hidden Markov model for signal peptides generated by HMMER

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The genetics of Aspergillus nidulans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analytical and computational approaches to define the Aspergillus niger secretome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-584

1 reference

Dimensions Publication ID

28 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-584

9 September 2019

1 reference

28 July 2017

1 reference