(Q34037944)

30 July 2017

title

Predicting peptide binding affinities to MHC molecules using a modified semi-empirical scoring function (English)

1 reference

30 July 2017

Webber W P Liao

1

1 reference

30 July 2017

Jonathan W Arthur

series ordinal

2

1 reference

30 July 2017

language of work or name

English

0 references

publication date

22 September 2011

1 reference

30 July 2017

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30 July 2017

volume

6

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30 July 2017

issue

9

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30 July 2017

page(s)

e25055

1 reference

Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

22 September 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Predicting peptide binding to Major Histocompatibility Complex molecules

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

5 July 2018

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Dysregulated Epstein-Barr virus infection in the multiple sclerosis brain

5 July 2018

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Structures of MART-126/27–35 Peptide/HLA-A2 Complexes Reveal a Remarkable Disconnect between Antigen Structural Homology and T Cell Recognition

5 July 2018

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5 July 2018

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Crystal structures of high affinity human T-cell receptors bound to peptide major histocompatibility complex reveal native diagonal binding geometry

5 July 2018

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Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity

5 July 2018

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Structural and kinetic basis for heightened immunogenicity of T cell vaccines

5 July 2018

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Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor

5 July 2018

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Increased immunogenicity of an anchor-modified tumor-associated antigen is due to the enhanced stability of the peptide/MHC complex: implications for vaccine design

5 July 2018

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Development of a DNA Vaccine Designed to Induce Cytotoxic T Lymphocyte Responses to Multiple Conserved Epitopes in HIV-1

5 July 2018

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Crystal structure of HLA-A2 bound to LIR-1, a host and viral major histocompatibility complex receptor

5 July 2018

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A structural basis for immunodominant human T cell receptor recognition

5 July 2018

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Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

5 July 2018

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Functional characterization of CTL against gp100 altered peptide ligands

5 July 2018

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A functional and structural basis for TCR cross-reactivity in multiple sclerosis

5 July 2018

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Generation of NY-ESO-1-specific CD4+ and CD8+ T cells by a single peptide with dual MHC class I and class II specificities: a new strategy for vaccine design.

5 July 2018

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Autoimmunity due to molecular mimicry as a cause of neurological disease

5 July 2018

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JenPep: a database of quantitative functional peptide data for immunology

5 July 2018

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5 July 2018

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Structure of a covalently stabilized complex of a human alphabeta T-cell receptor, influenza HA peptide and MHC class II molecule, HLA-DR1

5 July 2018

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5 July 2018

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Identification of three HLA-A*0201-restricted cytotoxic T cell epitopes in the cytomegalovirus protein pp65 that are conserved between eight strains of the virus

5 July 2018

1 reference

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Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

5 July 2018

1 reference

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Crystal structure of HLA-DR2 (DRA*0101, DRB1*1501) complexed with a peptide from human myelin basic protein

5 July 2018

1 reference

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Crystal structures of HLA-A*0201 complexed with antigenic peptides with either the amino- or carboxyl-terminal group substituted by a methyl group

5 July 2018

1 reference

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Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes.

5 July 2018

1 reference

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Crystal structure of the complex between human CD8alpha(alpha) and HLA-A2

5 July 2018

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5 July 2018

1 reference

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The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3178607

Ranking potential binding peptides to MHC molecules by a computational threading approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3178607

Structural requirements for binding of an immunodominant myelin basic protein peptide to DR2 isotypes and for its recognition by human T cell clones

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3178607

Application of machine learning techniques in predicting MHC binders.

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

Structural parameterization and functional prediction of antigenic polypeptome sequences with biological activity through quantitative sequence-activity models (QSAM) by molecular electronegativity edge-distance vector (VMED).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

Peptide binding to the HLA-DRB1 supertype: a proteochemometrics analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

Structure-based prediction of MHC-peptide association: algorithm comparison and application to cancer vaccine design.

21 January 2018

1 reference

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Theoretical prediction of a peptide binding to major histocompatibility complex II.

21 January 2018

1 reference

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Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

JenPep: a novel computational information resource for immunobiology and vaccinology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

Functional and structural characteristics of NY-ESO-1-related HLA A2-restricted epitopes and the design of a novel immunogenic analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0025055

Peptide-pulsed dendritic cells induce tumoricidal cytotoxic T lymphocytes from healthy donors against stably HLA-A*0201-binding peptides from the Melan-A/MART-1 self antigen

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21966412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HLA-DR restricted peptide candidates for bee venom immunotherapy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21966412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/21966412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0025055

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference