(Q34201512)

31 July 2017

Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach (English)

1 reference

31 July 2017

0 references

2

Tamar Schlick

1 reference

31 July 2017

Hin Hark Gan

1

1 reference

PubMed ID

20959100

31 July 2017

language of work or name

English

0 references

publication date

1 October 2010

1 reference

31 July 2017

1 reference

31 July 2017

99

1 reference

31 July 2017

8

1 reference

31 July 2017

2587-2596

1 reference

Modeling studies of chromatin fiber structure as a function of DNA linker length.

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Mesoscale simulations of two nucleosome-repeat length oligonucleosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Computer modeling reveals that modifications of the histone tail charges define salt-dependent interaction of the nucleosome core particles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Chromatin remodeling and cancer, Part I: Covalent histone modifications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Chromatin modifications and their function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Flexible histone tails in a new mesoscopic oligonucleosome model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Computer modeling demonstrates that electrostatic attraction of nucleosomal DNA is mediated by histone tails

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Histone H4-K16 acetylation controls chromatin structure and protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Electrostatic mechanism of nucleosomal array folding revealed by computer simulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Ionic effects beyond Poisson-Boltzmann theory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

DNA-dependent divalent cation binding in the nucleosome core particle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Computer simulation of the 30-nanometer chromatin fiber.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Aggregation of nucleosomes by divalent cations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Effective interactions between electric double layers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

DNA bending by small, mobile multivalent cations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Ionic effects on the elasticity of single DNA molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Brownian dynamics simulation of DNA unrolling from the nucleosome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

The effect of internucleosomal interaction on folding of the chromatin fiber

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Computational modeling predicts the structure and dynamics of chromatin fiber

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Modeling salt-mediated electrostatics of macromolecules: the discrete surface charge optimization algorithm and its application to the nucleosome

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Coarse-grained force field for the nucleosome from self-consistent multiscaling

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955394

Highly compact folding of chromatin induced by cellular cation concentrations. Evidence from atomic force microscopy studies in aqueous solution

28 October 2018

1 reference

12 December 2020

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

1 reference

12 December 2020

Formation and stability of higher order chromatin structures. Contributions of the histone octamer

1 reference

12 December 2020

Poisson–Boltzmann Methods for Biomolecular Electrostatics

1 reference

12 December 2020

Monte Carlo simulation of chromatin stretching

1 reference

12 December 2020

Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains

1 reference

12 December 2020

Counterion atmosphere and hydration patterns near a nucleosome core particle

1 reference

12 December 2020

Physicochemical studies of the folding of the 100 A nucleosome filament into the 300 A filament. Cation dependence

1 reference

12 December 2020

Phase Diagram of Nucleosome Core Particles

1 reference

12 December 2020

10.1016/J.BPJ.2010.08.023

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

20959100