(Q34225603)

31 July 2017

Bioinformatic challenges for DNA metabarcoding of plants and animals (English)

1 reference

31 July 2017

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1 reference

1

Eric Coissac

0 references

Nicolas Puillandre

series ordinal

3

object named as

Nicolas Puillandre

1 reference

31 July 2017

Tiayyba Riaz

2

1 reference

31 July 2017

1 April 2012

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31 July 2017

1 reference

31 July 2017

21

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31 July 2017

8

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31 July 2017

1834-1847

1 reference

The UNITE database for molecular identification of fungi--recent updates and future perspectives.

31 July 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A step toward barcoding life: a model-based, decision-theoretic method to assign genes to preexisting species groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

UniPrime: a workflow-based platform for improved universal primer design

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Learning to classify species with barcodes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Tracking earthworm communities from soil DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Using population genetic theory and DNA sequences for species detection and identification in asexual organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Defining operational taxonomic units using DNA barcode data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Caspase deficiency alters the murine gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A DNA barcode for land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Rapid DNA barcoding analysis of large datasets using the composition vector method

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA-BAR: distinguisher selection for DNA barcoding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

The unholy trinity: taxonomy, species delimitation and DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

PrimerHunter: a primer design tool for PCR-based virus subtype identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

UCHIME improves sensitivity and speed of chimera detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

SpedeSTEM: a rapid and accurate method for species delimitation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

An in silico approach for the evaluation of DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Microbial biogeography of public restroom surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Four years of DNA barcoding: current advances and prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

The seasonal structure of microbial communities in the Western English Channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Integrating DNA barcode data and taxonomic practice: determination, discovery, and description

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Googling DNA sequences on the World Wide Web.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A minimalist barcode can identify a specimen whose DNA is degraded

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Species delimitation using dominant and codominant multilocus markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Biological identifications through DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Identification of Birds through DNA Barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Amplicon: software for designing PCR primers on aligned DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Delimiting species without monophyletic gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

PCR error and molecular population genetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Enhancements and modifications of primer design program Primer3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Efficient alignment-free DNA barcode analytics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA barcoding the floras of biodiversity hotspots

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA barcode sequence identification incorporating taxonomic hierarchy and within taxon variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Assigning sequences to species in the absence of large interspecific differences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A universal DNA mini-barcode for biodiversity analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Accelerated species inventory on Madagascar using coalescent-based models of species delineation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Statistical assignment of DNA sequences using Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Statistical approaches for DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Performance of distance-based DNA barcoding in the molecular identification of primates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

New heuristic methods for joint species delimitation and species tree inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

The integrative future of taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

An evaluation of candidate plant DNA barcodes and assignment methods in diagnosing 29 species in the genus Agalinis (Orobanchaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Who is eating what: diet assessment using next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Removing noise from pyrosequenced amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Testing the reliability of genetic methods of species identification via simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Species delimitation: a case study in a problematic ant taxon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Use of the Genealogical Sorting Index (GSI) to delineate species boundaries in the Neofusicoccum parvum-Neofusicoccum ribis species complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Quality control and preprocessing of metagenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A scalable method for analysis and display of DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Structural analysis of biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

TaxI: a software tool for DNA barcoding using distance methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Towards next-generation biodiversity assessment using DNA metabarcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

DNA barcoding for ecologists

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Back to the future: museum specimens in population genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Diverse plant and animal genetic records from Holocene and Pleistocene sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Ancient biomolecules from deep ice cores reveal a forested southern Greenland

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Inferring species membership using DNA sequences with back-propagation neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Two decades of describing the unseen majority of aquatic microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05550.X

10.1111/J.1365-294X.2012.05550.X

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

1 reference

PubMed ID

22486822