(Q34280166)

1 August 2017

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title

Multiple alignment of complete sequences (MACS) in the post-genomic era. (English)

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1 August 2017

1 reference

Lecompte O

1

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1 August 2017

Thompson JD

2

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1 August 2017

Plewniak F

3

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1 August 2017

Thierry J

4

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1 August 2017

Poch O

5

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1 August 2017

language of work or name

English

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publication date

1 May 2001

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1 August 2017

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1 August 2017

270

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1 August 2017

17-30

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1 August 2017

1-2

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Alignment algorithm for homology modeling and threading

1 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Automated genome sequence analysis and annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Sequence alignment in molecular biology.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Lineage-specific loss and divergence of functionally linked genes in eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Homology modelling by distance geometry

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

PRINTS-S: the database formerly known as PRINTS.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The Pfam protein families database.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

ORBIT: an integrated environment for user-customized bioinformatics tools

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

1 reference

7 January 2021

Dealing with database explosion: a cautionary note.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Go hunting in sequence databases but watch out for the traps.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Sequences and topology

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Predicting functions from protein sequences--where are the bottlenecks?

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Errors in genome annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Target selection for structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Expectations from structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A symmetric-iterated multiple alignment of protein sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Combining many multiple alignments in one improved alignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

An overview of structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The Multiple Sequence Alignment Problem in Biology

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A method to predict functional residues in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Kleisli: a new tool for data integration in biology

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Improving protein secondary structure prediction with aligned homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein annotation: detective work for function prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Assessing evolutionary relationships among microbes from whole-genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein function in the post-genomic era.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Distinguishing Homologous from Analogous Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The future of protein secondary structure prediction accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Who's your neighbor? New computational approaches for functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Orthologs, paralogs and genome comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genomics: from novel genes to new therapeutics in parasitology

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Recurring local sequence motifs in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Analysis and prediction of functional sub-types from protein sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Unified approach to alignment and phylogenies

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Increased coverage of protein families with the blocks database servers

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Gene families: the taxonomy of protein paralogs and chimeras

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Mycoplasma pneumoniae and Mycoplasma genitalium: a comparison of two closely related bacterial species

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The GeneQuiz Web server: protein functional analysis through the Web

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The PROSITE database, its status in 1999

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The FSSP database: fold classification based on structure-structure alignment of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein folds and families: sequence and structure alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Evolution of simple sequence in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Key residues approach to the definition of protein families and analysis of sparse family signatures

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Horizontal gene transfer among genomes: the complexity hypothesis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Alfresco--a workbench for comparative genomic sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Comparative genomes of Chlamydia pneumoniae and C. trachomatis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

What we do not know about sequence analysis and sequence databases

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Hidden Markov models for detecting remote protein homologies

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Enhanced genome annotation using structural profiles in the program 3D-PSSM

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The impact of comparative genomics on our understanding of evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Initial sequencing and analysis of the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Chemical ligands, genomics and drug discovery

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

SCOP: a structural classification of proteins database

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genomics, gene expression and DNA arrays

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Computational genetics: finding protein function by nonhomology methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A combined algorithm for genome-wide prediction of protein function

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A census of protein repeats

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Imagene: an integrated computer environment for sequence annotation and analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

JOY: protein sequence-structure representation and analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Multiple DNA and protein sequence alignment based on segment-to-segment comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Benchmarking PSI-BLAST in genome annotation.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Extracting protein alignment models from the sequence database

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Highly specific protein sequence motifs for genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Extremophiles as a source of novel enzymes for industrial application

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

SAGA: sequence alignment by genetic algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Proteomics to study genes and genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A databank (3D-ali) collecting related protein sequences and structures

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Improved tools for biological sequence comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genome data shake tree of life

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Multiple sequence alignment in phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Ballast: blast post-processing based on locally conserved segments

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

An iterative method for faster sum-of-pairs multiple sequence alignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein secondary structure prediction using local alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein structure modeling for structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Minimal Mutation Trees of Sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Large-scale comparison of protein sequence alignment algorithms with structure alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Finding function through structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A phylogenomic approach to microbial evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Structural genomics and its importance for gene function analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Identification of common molecular subsequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Protein three-dimensional structural databases: domains, structurally aligned homologues and superfamilies.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Do more complex organisms have a greater proportion of membrane proteins in their genomes?

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Multiple sequence alignment with the Divide-and-Conquer method.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A flexible method to align large numbers of biological sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Multiple protein sequence alignment using double-dynamic programming.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Advances in structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

A comprehensive comparison of multiple sequence alignment programs

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Recent developments and future directions in computational genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

Secator: a program for inferring protein subfamilies from phylogenetic trees

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

In unison: regularization of protein secondary structure predictions that makes use of multiple sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2801%2900461-9

7 January 2021

10.1016/S0378-1119(01)00461-9

Identifiers

DOI

1 reference

1 August 2017

1 reference