(Q34323341)

1 August 2017

title

The ABCs of molecular dynamics simulations on B-DNA, circa 2012. (English)

1 reference

1 August 2017

author

Thomas E. Cheatham, III

series ordinal

2

object named as

Thomas E Cheatham

1 reference

1 August 2017

David L Beveridge

1

1 reference

1 August 2017

Mihaly Mezei

series ordinal

3

1 reference

1 August 2017

publication date

1 July 2012

1 reference

1 August 2017

published in

Journal of Biosciences

1 reference

1 August 2017

volume

37

1 reference

1 August 2017

issue

3

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1 August 2017

page(s)

379-397

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Frontiers in molecular dynamics simulations of DNA.

1 August 2017

cites work

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Use of a 3D structure data base for understanding sequence-dependent conformational aspects of DNA.

6 July 2018

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A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

6 July 2018

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Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

6 July 2018

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6 July 2018

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6 July 2018

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Crystal structure analysis of a complete turn of B-DNA

6 July 2018

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Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

6 July 2018

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Codon--anticodon pairing: the wobble hypothesis

6 July 2018

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Sequence-dependent bending of DNA and phasing of nucleosomes

6 July 2018

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Structural chemistry of biomolecular hydration via computer simulation: the proximity criterion.

6 July 2018

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6 July 2018

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6 July 2018

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The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

6 July 2018

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6 July 2018

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6 July 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Kinking occurs during molecular dynamics simulations of small DNA minicircles.

21 January 2018

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On the parameterization of rigid base and basepair models of DNA from molecular dynamics simulations.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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12 December 2020

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Influence of the dynamic positions of cations on the structure of the DNA minor groove: sequence-dependent effects

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Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants

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Relative Flexibility of DNA and RNA: a Molecular Dynamics Study

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Mechanics of sequence-dependent stacking of bases in B-DNA

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Computer simulation of DNA double-helix dynamics

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Structural behavior of the CpG step in two related oligonucleotides reflects its malleability in solution

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12 December 2020

10.1007/S12038-012-9222-6

Identifiers

DOI

1 reference

Dimensions Publication ID

1 August 2017

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1 reference

1 August 2017

1 reference