(Q34389273)

1 August 2017

title

Long non-coding RNAs: new players in cell differentiation and development (English)

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1 August 2017

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Alessandro Fatica

1

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author name string

Irene Bozzoni

series ordinal

2

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1 August 2017

publication date

3 December 2013

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1 August 2017

published in

Nature Reviews Genetics

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1 August 2017

volume

15

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1 August 2017

issue

1

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1 August 2017

page(s)

7-21

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Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

1 August 2017

cites work

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Landscape of transcription in human cells

31 March 2020

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The relationship between non-protein-coding DNA and eukaryotic complexity.

31 March 2020

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31 March 2020

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Genome regulation by long noncoding RNAs.

31 March 2020

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

31 March 2020

1 reference

Long noncoding RNAs: cellular address codes in development and disease

31 March 2020

1 reference

Modular regulatory principles of large non-coding RNAs

31 March 2020

1 reference

Yeast telomerase RNA: a flexible scaffold for protein subunits

31 March 2020

1 reference

Chromosomal silencing and localization are mediated by different domains of Xist RNA.

31 March 2020

1 reference

Long noncoding RNA as modular scaffold of histone modification complexes

31 March 2020

1 reference

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

31 March 2020

1 reference

lincRNAs act in the circuitry controlling pluripotency and differentiation

31 March 2020

1 reference

Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

31 March 2020

1 reference

Specific expression of long noncoding RNAs in the mouse brain

31 March 2020

1 reference

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

31 March 2020

1 reference

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

31 March 2020

1 reference

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

31 March 2020

1 reference

Expression patterns of non-coding spliced transcripts from human endogenous retrovirus HERV-H elements in colon cancer

31 March 2020

1 reference

Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs

31 March 2020

1 reference

A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

31 March 2020

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Roles for microRNAs in conferring robustness to biological processes

31 March 2020

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Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal

31 March 2020

1 reference

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

31 March 2020

1 reference

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

31 March 2020

1 reference

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

31 March 2020

1 reference

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

31 March 2020

1 reference

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

31 March 2020

1 reference

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

31 March 2020

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

31 March 2020

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The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin

31 March 2020

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Long noncoding RNAs with enhancer-like function in human cells

31 March 2020

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Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

31 March 2020

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YY1 tethers Xist RNA to the inactive X nucleation center

31 March 2020

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Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

31 March 2020

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Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

31 March 2020

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Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

31 March 2020

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Jpx RNA activates Xist by evicting CTCF.

31 March 2020

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

31 March 2020

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ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

31 March 2020

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The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

31 March 2020

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Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.

31 March 2020

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LincRNA-p21 suppresses target mRNA translation

31 March 2020

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Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase

31 March 2020

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Control of somatic tissue differentiation by the long non-coding RNA TINCR.

31 March 2020

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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements

31 March 2020

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Control of myogenesis by rodent SINE-containing lncRNAs

31 March 2020

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A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?

31 March 2020

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Target mimicry provides a new mechanism for regulation of microRNA activity

31 March 2020

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

31 March 2020

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In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma

31 March 2020

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

31 March 2020

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miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

31 March 2020

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Natural RNA circles function as efficient microRNA sponges

31 March 2020

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Circular RNAs are a large class of animal RNAs with regulatory potency

31 March 2020

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X-inactivation, imprinting, and long noncoding RNAs in health and disease

31 March 2020

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Requirement for Xist in X chromosome inactivation

31 March 2020

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Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing

31 March 2020

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Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway

31 March 2020

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Disruption of imprinted X inactivation by parent-of-origin effects at Tsix.

31 March 2020

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The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation

31 March 2020

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Xist RNA is a potent suppressor of hematologic cancer in mice

31 March 2020

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Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1

31 March 2020

1 reference

The non-coding Air RNA is required for silencing autosomal imprinted genes

31 March 2020

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Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

31 March 2020

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Epigenetic control of Hox genes during neurogenesis, development, and disease.

31 March 2020

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Targeted disruptions of the murine Hoxa-4 and Hoxa-6 genes result in homeotic transformations of components of the vertebral column

31 March 2020

1 reference

A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster

31 March 2020

1 reference

linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis

31 March 2020

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Targeted disruption of Hotair leads to homeotic transformation and gene derepression

31 March 2020

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Hox C cluster genes are dispensable for overall body plan of mouse embryonic development

31 March 2020

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Structural and functional differences in the long non-coding RNA hotair in mouse and human

31 March 2020

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

31 March 2020

1 reference

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

31 March 2020

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

31 March 2020

1 reference

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

31 March 2020

1 reference

Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells

31 March 2020

1 reference

Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease

31 March 2020

1 reference

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression

31 March 2020

1 reference

The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

31 March 2020

1 reference

The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells

31 March 2020

1 reference

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

31 March 2020

1 reference

Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq

31 March 2020

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An RNA gene expressed during cortical development evolved rapidly in humans

31 March 2020

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A high-resolution map of human evolutionary constraint using 29 mammals

31 March 2020

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Accelerated evolution of nervous system genes in the origin of Homo sapiens

31 March 2020

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Complex architecture and regulated expression of the Sox2ot locus during vertebrate development

31 March 2020

1 reference

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

31 March 2020

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Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

31 March 2020

1 reference

Making sense of Dlx1 antisense RNA.

31 March 2020

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MicroRNA-125b promotes neuronal differentiation in human cells by repressing multiple targets

31 March 2020

1 reference

Braveheart, a long noncoding RNA required for cardiovascular lineage commitment

31 March 2020

1 reference

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

31 March 2020

1 reference

Biogenesis and function of non-coding RNAs in muscle differentiation and in Duchenne muscular dystrophy

31 March 2020

1 reference

The imprinted H19 lncRNA antagonizes let-7 microRNAs.

31 March 2020

1 reference

A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

31 March 2020

1 reference

Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation

31 March 2020

1 reference

Long noncoding RNAs regulate adipogenesis

31 March 2020

1 reference

Flowering time control: another window to the connection between antisense RNA and chromatin.

31 March 2020

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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

31 March 2020

1 reference

The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC.

31 March 2020

1 reference

Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.

31 March 2020

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R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.

31 March 2020

1 reference

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

31 March 2020

1 reference

Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence

31 March 2020

1 reference

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

31 March 2020

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

31 March 2020

1 reference

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

31 March 2020

1 reference

Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification.

31 March 2020

1 reference

The transcriptional activity of human Chromosome 22

31 March 2020

1 reference

Serial analysis of gene expression

31 March 2020

1 reference

5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation

31 March 2020

1 reference

SuperSAGE: a modern platform for genome-wide quantitative transcript profiling

31 March 2020

1 reference

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

31 March 2020

1 reference

Mapping and quantifying mammalian transcriptomes by RNA-Seq

31 March 2020

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The spliceosome: design principles of a dynamic RNP machine

31 March 2020

1 reference

31 March 2020

1 reference

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

31 March 2020

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Opposing microRNA families regulate self-renewal in mouse embryonic stem cells

31 March 2020

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Core transcriptional regulatory circuitry in human embryonic stem cells

31 March 2020

1 reference

Distinct and dynamic myogenic populations in the vertebrate embryo.

31 March 2020

1 reference

Dystrophin Orchestrates the Epigenetic Profile of Muscle Cells Via miRNAs

31 March 2020

1 reference

miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy

31 March 2020

1 reference

The long noncoding RNA RNCR2 directs mouse retinal cell specification

31 March 2020

1 reference

The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

31 March 2020

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The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina

31 March 2020

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The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina

31 March 2020

1 reference

Regulation of imprinted X-chromosome inactivation in mice by Tsix.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24296535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cryptic transcription and early termination in the control of gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24296535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24296535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG3606

1 reference

Dimensions Publication ID

1 August 2017

1005007298

0 references

1 reference